Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1982.2 1012 100.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1830.8 1012 91.7
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1825.8 1012 91.0
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1738.8 1013 86.5
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1362.1 1023 68.5
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1330.5 1023 66.7
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1328.2 1021 66.2
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1327.0 1022 67.1
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1310.8 1013 65.8
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1296.6 1014 65.2
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1291.2 1012 65.8
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1286.9 1026 63.8
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1285.4 1016 64.4
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1273.5 993 64.5
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1268.4 1008 64.3
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1267.3 1008 64.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1264.2 1012 63.1
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1263.8 1009 64.3
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1257.7 1050 62.2
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1253.8 1019 64.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1249.2 1021 63.9
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1248.8 1019 62.4
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1246.9 1019 63.7
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1244.6 1016 62.9
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1240.3 1022 61.5
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1238.4 993 63.5
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1237.6 1024 63.1
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1231.1 1022 61.1
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1228.8 1013 63.3
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1218.8 1010 61.7
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1218.0 1025 61.0
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1216.8 1012 61.5
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1212.6 1014 62.2
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1208.0 1008 62.5
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1201.8 1021 60.9
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1201.4 1017 61.9
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1199.1 1008 61.8
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1194.1 1014 62.1
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1185.2 903 67.8
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1185.2 1016 59.6
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1185.2 1015 61.2
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1169.5 1024 58.9
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1166.8 1070 57.9
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1165.6 1052 59.1
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1154.8 1038 58.1
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1154.8 991 60.1
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1152.1 1040 58.5
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1135.6 1006 58.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1124.4 1016 57.0
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1123.6 1009 57.8
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1116.7 1024 56.9
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1110.1 1014 57.1
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1104.0 1015 57.3
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1103.6 1019 57.4
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1097.4 1020 56.9
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1095.9 1010 55.9
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1094.3 1018 56.8
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1094.3 1015 57.4
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1094.0 1006 57.2
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1090.9 1019 57.0
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1081.2 1015 55.3
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1079.3 1019 56.3
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1077.8 1019 56.1
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 6.9e-312 1074.7 1013 55.1
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.4e-310 1068.9 897 62.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 3.0e-310 1068.5 1015 55.7
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 1015 55.8
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 9.9e-309 1063.5 1016 54.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 1015 54.6
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 4.9e-308 1061.2 1030 55.7
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 6.4e-308 1060.8 1025 55.1
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.1e-307 1060.1 1014 55.3
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 1.4e-307 1059.7 1039 55.1
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 7.1e-307 1057.4 990 56.0
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.3e-305 1053.1 1011 55.7
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 3.9e-305 1051.6 1016 54.8
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.5e-304 1048.9 1042 53.0
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.6e-303 1045.0 845 64.4
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 5.2e-302 1041.2 1007 54.3
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 9.3e-299 1030.4 953 56.1
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 8.7e-297 1023.8 1032 54.5
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.1e-295 1019.2 1016 52.9
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.4e-293 1011.9 1014 53.9
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.1e-290 1002.7 1048 53.2
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 3.3e-288 995.3 1025 52.1
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.8e-284 981.9 1009 53.1
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 5.5e-283 978.0 975 53.2
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.6e-271 939.9 775 63.5
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.4e-270 936.8 738 64.6
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 4.2e-267 925.2 1013 50.9
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.8e-265 919.8 1015 49.2
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.3e-265 919.5 1011 49.6
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 7.9e-258 894.4 1023 48.9
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.0e-196 689.9 660 55.2
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 3.9e-196 689.5 684 54.4
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.5e-195 687.6 660 55.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.3e-183 647.9 631 55.9
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.6e-178 629.8 589 54.2
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 2.4e-177 627.1 552 60.3
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 3.5e-165 586.6 1097 35.2
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.5e-147 528.1 1091 34.0
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 8.2e-146 522.3 531 54.2
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 4.1e-137 493.4 894 36.4
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 8.5e-135 485.7 347 68.9
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 9.5e-102 375.9 1118 28.9
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.9e-98 363.6 389 50.4
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 3.5e-96 357.5 1126 29.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.7e-95 355.1 437 43.0
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 3.9e-95 354.0 327 56.9
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.2e-75 289.3 357 44.8
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 9.6e-62 243.0 258 50.8
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 2.2e-50 205.3 218 50.5
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 2.9e-50 204.9 559 32.0
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.1e-49 203.0 146 66.4
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.2e-43 183.0 149 63.8
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.0e-39 168.3 224 47.3
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.5e-33 148.7 149 47.7
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 9.1e-28 130.2 423 28.4
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.4e-27 128.3 103 59.2
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 7.7e-27 127.1 171 44.4
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.0e-26 124.4 219 37.9
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.7e-21 109.4 81 59.3
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 9.1e-20 103.6 218 36.7
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 3.5e-19 101.7 144 37.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 7.7e-19 100.5 69 63.8
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.8e-18 98.2 69 62.3
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 2.7e-16 92.0 77 50.6
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.0e-15 90.1 128 39.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 9.7e-14 83.6 103 46.6
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 2.8e-13 82.0 234 31.6
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-12 80.1 55 63.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.1e-12 80.1 55 63.6
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 3.1e-12 78.6 62 59.7
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 3.5e-11 75.1 47 66.0
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.0e-10 73.6 152 37.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 3.2e-09 68.6 62 54.8
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 4.0e-07 61.6 33 81.8
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 2.6e-06 58.9 52 53.8


User provided reference genes

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