Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 0.0e+00 1364.7 674 100.0
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 0.0e+00 1156.7 649 87.2
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 0.0e+00 1149.0 655 87.8
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 0.0e+00 1141.7 649 87.4
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 8.1e-267 923.7 652 70.9
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 8.4e-264 913.7 646 70.0
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.3e-261 906.4 653 68.1
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 6.7e-261 904.0 653 69.2
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 8.7e-261 903.7 680 67.6
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.1e-260 903.3 655 69.0
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 5.3e-258 894.4 652 67.9
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 6.9e-258 894.0 655 67.2
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.6e-257 892.1 656 67.4
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 8.4e-256 887.1 652 66.1
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.1e-255 886.7 655 67.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-253 879.8 649 67.2
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 2.2e-251 872.5 654 64.5
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.1e-250 870.2 650 67.2
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.5e-249 864.8 658 65.7
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.2e-248 862.4 658 65.8
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.1e-247 860.1 643 65.3
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.1e-247 860.1 644 65.4
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 9.3e-247 857.1 653 65.5
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 8.8e-245 850.5 648 65.9
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.5e-244 849.7 651 65.7
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 4.3e-244 848.2 653 66.0
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 9.7e-244 847.0 651 64.8
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 3.7e-243 845.1 651 64.7
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 6.3e-243 844.3 647 63.5
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 3.1e-242 842.0 651 65.1
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 4.1e-242 841.6 651 65.3
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 6.9e-242 840.9 625 66.2
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 6.9e-242 840.9 625 66.2
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 1.5e-241 839.7 648 64.2
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.0e-240 837.0 655 65.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.3e-240 836.6 639 65.4
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 4.2e-239 831.6 651 63.0
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 7.2e-239 830.9 630 65.9
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 4.7e-238 828.2 648 63.6
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 6.1e-238 827.8 655 63.5
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 6.7e-237 824.3 648 63.3
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.1e-236 823.5 648 63.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.1e-236 823.5 653 63.6
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.2e-235 819.3 657 62.7
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.8e-234 816.2 657 63.8
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 4.1e-234 815.1 653 62.5
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 4.1e-234 815.1 645 62.3
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.6e-233 812.4 644 63.4
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 7.7e-233 810.8 652 62.7
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.0e-232 810.4 658 63.1
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.7e-232 809.7 645 63.7
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.7e-232 809.7 649 62.6
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.0e-232 808.1 654 61.8
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 2.5e-231 805.8 652 59.5
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 3.2e-231 805.4 652 62.4
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 7.2e-231 804.3 655 62.1
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 9.4e-231 803.9 610 64.9
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.0e-229 800.4 649 61.9
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 3.0e-229 798.9 654 61.8
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.9e-229 798.5 656 63.0
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 2.0e-228 796.2 649 61.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 5.7e-228 794.7 655 62.0
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 7.4e-228 794.3 651 61.9
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 9.7e-228 793.9 652 61.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.3e-227 793.5 657 61.5
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 2.2e-227 792.7 650 61.1
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 3.7e-227 792.0 651 61.4
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 4.1e-226 788.5 651 60.5
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.2e-225 786.9 538 71.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 3.5e-225 785.4 657 61.3
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.3e-224 783.5 651 60.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 3.8e-224 781.9 661 59.9
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 5.5e-223 778.1 650 61.8
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 9.4e-223 777.3 614 64.5
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 3.6e-222 775.4 658 61.2
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.0e-221 773.9 625 63.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 2.0e-220 769.6 662 59.5
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.0e-220 769.6 658 61.1
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.6e-217 760.0 649 61.3
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.8e-213 746.5 655 59.8
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.7e-211 740.0 648 57.9
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 3.7e-211 738.8 657 56.2
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.7e-211 738.8 651 54.7
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 4.1e-202 708.8 648 56.5
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 8.9e-197 691.0 641 55.1
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.5e-196 690.3 575 61.0
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.3e-183 644.8 585 53.7
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 8.3e-179 631.3 670 52.1
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.2e-174 617.5 486 64.4
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 4.7e-174 615.5 509 59.9
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.9e-171 606.3 624 55.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 8.7e-168 594.7 580 55.9
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.6e-161 573.9 657 49.2
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.8e-150 536.6 590 50.8
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 4.9e-147 525.8 629 44.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.3e-139 501.1 480 55.0
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.6e-137 494.2 640 44.7
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.4e-133 480.3 626 43.0
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.6e-124 450.3 548 47.4
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.3e-123 448.0 255 83.5
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 4.7e-113 412.9 397 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 6.5e-99 365.9 636 37.1
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 9.4e-98 362.1 362 51.9
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 6.1e-97 359.4 481 43.7
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 2.3e-91 340.9 398 46.5
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 3.8e-91 340.1 296 60.5
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.5e-90 338.2 178 86.0
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.2e-84 318.5 428 43.5
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.1e-77 295.4 197 71.6
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 8.9e-64 249.2 276 46.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.6e-55 221.1 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.2e-52 212.2 104 91.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.3e-51 208.0 106 84.9
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 7.3e-50 203.0 229 46.3
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 9.9e-39 166.0 495 30.9
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 1.8e-35 155.2 200 41.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.3e-33 149.1 178 45.5
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 6.9e-32 143.3 137 54.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 7.1e-29 133.3 151 51.0
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.3e-27 128.3 86 74.4
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.1e-24 119.4 58 84.5
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.8e-24 118.6 83 68.7
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.8e-22 110.9 102 54.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 5.5e-21 107.1 75 69.3
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.1e-18 99.4 72 62.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 4.5e-15 87.4 76 59.2
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 7.7e-15 86.7 74 60.8
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 7.7e-15 86.7 74 59.5
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 3.8e-14 84.3 74 59.5
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 5.0e-14 84.0 74 58.1
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 3.2e-13 81.3 74 58.1
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.0e-11 74.7 93 49.5
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 6.7e-11 73.6 93 48.4
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 2.4e-08 65.1 95 44.2
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 4.1e-08 64.3 95 43.2
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 7.7e-07 60.1 104 29.8


User provided reference genes

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