Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 0.0e+00 1088.2 585 100.0
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 1.4e-222 776.5 585 73.3
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 4.1e-150 535.8 628 52.4
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.8e-144 515.4 645 49.5
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.1e-139 501.1 598 52.7
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.5e-139 500.0 647 47.8
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.1e-137 493.0 310 81.3
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 3.1e-137 493.0 644 48.8
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 6.9e-137 491.9 664 49.4
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.0e-136 490.3 665 46.2
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.0e-136 490.3 651 46.9
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 5.8e-136 488.8 619 49.8
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.2e-135 486.9 625 48.2
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.2e-134 483.0 623 48.3
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 4.2e-134 482.6 642 47.5
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 5.4e-134 482.3 625 48.0
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 9.3e-134 481.5 632 48.6
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.6e-133 479.2 624 47.6
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.6e-133 479.2 624 47.9
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.9e-132 476.1 636 48.6
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 3.1e-129 466.5 619 50.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 3.1e-129 466.5 637 47.3
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 2.6e-128 463.4 628 48.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 7.6e-128 461.8 608 47.9
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.1e-126 458.0 636 48.1
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.6e-125 454.1 534 50.7
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 3.9e-124 449.5 511 52.6
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.3e-123 446.4 658 45.3
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 6.2e-122 442.2 623 46.5
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 8.1e-122 441.8 659 44.9
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 1.8e-121 440.7 624 46.2
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 6.9e-121 438.7 593 47.0
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 1.2e-120 438.0 561 48.5
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 1.5e-120 437.6 663 44.5
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 7.6e-120 435.3 638 45.6
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 9.9e-120 434.9 561 48.1
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 1.7e-119 434.1 637 44.6
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.9e-118 430.6 606 46.7
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 3.2e-118 429.9 595 45.7
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.2e-118 429.9 658 45.0
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 3.2e-118 429.9 649 44.5
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.6e-117 427.6 648 44.8
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 6.0e-117 425.6 672 43.6
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 2.3e-116 423.7 535 49.5
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.5e-115 420.2 699 41.9
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 2.1e-114 417.2 555 48.1
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 4.8e-114 416.0 664 44.0
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 3.8e-111 406.4 635 42.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 4.6e-109 399.4 578 43.8
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.6e-106 391.0 571 45.5
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 3.4e-104 383.3 714 41.2
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 3.4e-96 356.7 424 52.1
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 3.8e-87 326.6 299 59.9
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 6.5e-87 325.9 299 58.2
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 9.4e-86 322.0 433 46.7
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.0e-84 318.5 532 41.0
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 5.2e-84 316.2 583 39.6
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 5.7e-83 312.8 438 45.9
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 2.4e-73 280.8 618 39.3
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 2.0e-72 277.7 400 48.2
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 4.5e-72 276.6 275 56.0
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 2.2e-71 274.2 493 40.4
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 3.2e-70 270.4 584 36.5
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.5e-67 261.5 277 54.2
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 6.3e-66 256.1 504 38.3
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 3.6e-61 240.4 461 43.6
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.6e-56 224.9 234 53.4
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 4.6e-48 196.8 218 51.4
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 4.6e-48 196.8 229 47.2
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 1.2e-45 188.7 134 86.6
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 3.4e-43 180.6 205 53.7
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 7.8e-40 169.5 383 37.6
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 2.8e-37 161.0 560 30.7
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 3.1e-36 157.5 246 45.1
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 3.1e-36 157.5 366 36.1
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.9e-35 152.5 219 40.2
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.2e-34 151.4 255 36.1
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.2e-34 151.4 255 36.1
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-34 151.0 221 39.4
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.4e-34 149.8 100 79.0
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 2.5e-30 137.9 365 35.3
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.9e-27 125.9 226 36.3
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.2e-26 124.8 223 34.5
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 2.1e-24 118.2 437 31.4
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.7e-24 117.9 187 39.0
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 3.0e-23 114.4 124 53.2
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.8e-21 107.8 286 28.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 2.6e-19 101.3 219 32.0
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 3.8e-18 97.4 391 30.9
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.5e-14 85.5 350 28.0
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 5.6e-14 83.6 350 27.7
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 7.3e-14 83.2 248 27.0
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.1e-13 81.6 332 27.4
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 8.1e-13 79.7 257 26.8
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 1.2e-11 75.9 231 27.7
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 2.6e-11 74.7 231 27.7
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 3.4e-11 74.3 274 27.4
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 4.5e-11 73.9 241 27.4
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 4.5e-11 73.9 241 27.4
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 5.8e-11 73.6 322 25.5
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 9.9e-11 72.8 217 27.6
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 9.9e-11 72.8 298 25.5
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.3e-10 72.4 232 26.7
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.3e-10 72.4 265 26.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.3e-10 72.4 231 26.4
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.7e-10 72.0 266 27.4
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 1.7e-10 72.0 299 26.1
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.7e-10 72.0 264 26.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.7e-10 72.0 264 26.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 1.7e-10 72.0 265 26.4
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.7e-10 72.0 217 27.2
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 2.2e-10 71.6 408 26.0
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 2.9e-10 71.2 234 26.9
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 3.8e-10 70.9 254 26.0
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 4.9e-10 70.5 265 26.8
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.9e-10 70.5 296 26.0
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 6.4e-10 70.1 325 25.8
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 6.4e-10 70.1 232 26.3
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 8.4e-10 69.7 231 26.0
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 8.4e-10 69.7 293 25.6
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.1e-09 69.3 229 25.8
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.4e-09 68.9 144 33.3
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.4e-09 68.9 410 25.4
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.9e-09 68.6 233 27.0
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.9e-09 68.6 285 26.3
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 3.2e-09 67.8 235 24.3
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 4.2e-09 67.4 240 26.2
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.4e-09 67.0 221 24.4
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 5.4e-09 67.0 278 25.5
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 5.4e-09 67.0 185 29.2
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 7.1e-09 66.6 231 26.8
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 7.1e-09 66.6 213 25.8
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 9.3e-09 66.2 233 25.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.2e-08 65.9 233 27.0
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.2e-08 65.9 220 25.5
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.6e-08 65.5 260 26.2
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 1.6e-08 65.5 268 26.1
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 2.1e-08 65.1 278 25.2
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 2.7e-08 64.7 271 24.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 2.7e-08 64.7 228 26.8
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.6e-08 63.9 278 24.8
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 1.3e-07 62.4 271 23.6
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 3.0e-07 61.2 235 25.5
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 6.7e-07 60.1 278 23.7
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.5e-06 58.2 195 26.2
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.3e-06 57.4 231 25.1
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 9.6e-06 56.2 258 23.6


User provided reference genes

Program Settings