Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 0.0e+00 1249.2 639 100.0
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 4.1e-284 981.1 568 90.1
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.4e-268 929.5 637 79.4
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.8e-268 929.1 568 86.1
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 3.2e-204 715.7 564 69.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 5.4e-204 714.9 572 67.7
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 8.7e-202 707.6 566 69.1
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 9.6e-201 704.1 576 66.5
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.8e-199 699.9 576 66.5
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 3.4e-198 695.7 571 66.2
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.7e-197 693.3 576 65.6
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.8e-197 692.2 576 65.6
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 3.8e-197 692.2 571 66.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 4.2e-196 688.7 564 65.1
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 9.3e-196 687.6 570 66.0
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.7e-195 686.0 570 64.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 2.7e-195 686.0 565 65.3
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.5e-193 679.5 567 64.9
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 4.3e-193 678.7 570 64.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 7.4e-193 677.9 569 64.9
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.4e-191 673.7 605 61.7
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.8e-191 673.3 568 65.3
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-191 672.9 583 64.2
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 2.4e-191 672.9 563 63.4
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.0e-190 669.8 575 64.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 2.6e-190 669.5 565 64.6
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.4e-190 669.1 576 64.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 4.5e-190 668.7 564 63.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.8e-190 668.3 576 64.1
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.3e-189 667.2 575 64.3
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.9e-189 666.0 570 64.7
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 4.9e-189 665.2 563 65.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 8.4e-189 664.5 564 64.0
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.9e-188 663.3 572 65.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-188 662.9 570 64.2
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 5.5e-188 661.8 575 64.9
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.1e-188 661.4 573 63.5
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.2e-187 660.6 584 62.0
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.8e-186 656.8 567 63.0
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.1e-185 654.1 569 63.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.3e-185 652.1 576 63.2
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 7.4e-185 651.4 567 61.0
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 9.6e-185 651.0 567 61.0
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 9.6e-185 651.0 567 61.0
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.6e-184 650.2 564 63.7
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.1e-184 649.8 593 60.2
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.7e-184 649.0 570 62.5
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 3.7e-184 649.0 574 63.1
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.8e-183 646.7 570 60.7
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 3.1e-183 646.0 526 67.7
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 5.3e-183 645.2 570 60.2
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 6.9e-183 644.8 552 64.7
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 9.0e-183 644.4 575 60.5
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.2e-182 644.0 570 60.0
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.2e-182 644.0 571 62.2
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.2e-182 644.0 588 62.2
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.0e-182 643.3 570 59.8
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.0e-182 643.3 575 60.3
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.5e-182 642.1 571 61.5
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 4.5e-182 642.1 574 60.6
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.0e-181 641.0 579 59.6
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.3e-181 640.6 571 60.8
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 7.2e-180 634.8 595 58.3
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 9.3e-180 634.4 569 60.6
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.6e-179 633.6 564 62.9
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.1e-179 633.3 501 67.1
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.6e-179 632.5 566 60.1
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 3.9e-178 629.0 568 61.8
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 5.1e-178 628.6 570 59.5
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.9e-177 626.7 564 62.2
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.3e-176 624.0 571 59.4
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 3.7e-176 622.5 566 61.0
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 8.2e-176 621.3 572 59.4
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 6.9e-175 618.2 604 59.4
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 2.0e-174 616.7 569 61.2
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 3.4e-174 615.9 569 61.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 4.5e-174 615.5 566 59.2
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 4.5e-174 615.5 601 59.7
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 3.8e-173 612.5 575 58.4
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 2.7e-171 606.3 571 60.1
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.8e-170 603.6 574 59.4
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.3e-168 597.4 589 57.6
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 4.1e-167 592.4 585 57.3
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 4.1e-167 592.4 573 59.3
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 5.3e-167 592.0 582 57.7
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.1e-164 584.3 575 56.2
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 4.7e-163 578.9 574 56.6
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 8.2e-160 568.2 508 60.2
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 9.1e-159 564.7 607 54.4
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.2e-158 564.3 584 55.8
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.1e-156 557.8 573 57.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.5e-156 556.6 480 62.5
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.4e-154 550.8 553 57.3
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 8.8e-154 548.1 476 62.6
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 4.8e-152 542.3 508 61.2
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.2e-150 537.7 466 63.3
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 4.5e-150 535.8 486 60.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 1.2e-147 527.7 563 55.2
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 2.1e-147 526.9 542 57.2
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 9.1e-143 511.5 569 54.0
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.3e-141 507.7 504 56.2
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.6e-139 500.7 532 52.4
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 4.4e-137 492.7 574 49.7
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 7.0e-135 485.3 575 51.8
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-134 484.6 349 72.5
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.5e-129 467.6 514 50.8
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 9.5e-124 448.4 350 69.7
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.7e-123 446.0 490 51.8
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.3e-117 427.9 335 66.9
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 4.0e-114 416.4 403 59.8
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 5.8e-113 412.5 524 48.7
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 3.0e-109 400.2 242 82.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 3.0e-109 400.2 242 82.6
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.5e-108 397.9 500 48.6
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.3e-108 395.6 243 82.3
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 5.2e-106 389.4 361 59.6
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 9.6e-100 368.6 232 77.2
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-98 364.8 407 52.8
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.0e-93 347.1 393 51.4
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.6e-91 341.3 192 88.0
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.8e-90 337.8 420 51.4
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 3.9e-85 320.1 415 49.6
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.5e-84 318.2 283 60.4
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 8.1e-83 312.4 572 37.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.5e-79 299.7 400 48.0
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.3e-77 295.0 305 54.8
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 9.6e-76 288.9 159 86.8
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 7.6e-73 279.3 578 35.3
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.7e-68 263.1 322 48.4
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 3.7e-67 260.4 387 46.0
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 3.6e-62 243.8 143 83.2
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.5e-60 238.4 449 39.0
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.3e-60 237.3 143 84.6
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.2e-59 232.6 143 82.5
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.0e-57 228.0 134 85.8
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.7e-56 224.9 226 56.6
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-55 222.2 128 87.5
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.1e-47 195.7 243 46.1
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-47 194.1 553 29.8
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 6.1e-38 163.3 504 30.2
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-35 154.5 88 87.5
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-32 146.0 173 52.0
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-32 145.6 92 79.3
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.1e-23 115.9 184 41.3
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.5e-23 115.5 253 35.2
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.6e-22 112.1 211 38.4
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 6.1e-22 110.2 91 64.8
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 2.3e-21 108.2 132 48.5
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-19 101.3 255 29.4
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 3.7e-19 100.9 261 30.3
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.1e-18 97.4 52 92.3
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.0e-18 96.7 121 47.1
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 1.2e-14 85.9 45 86.7
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.6e-06 58.9 201 27.9
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 2.1e-06 58.5 302 25.5
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 3.6e-06 57.8 32 93.8


User provided reference genes

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