Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 0.0e+00 1239.9 642 100.0
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 0.0e+00 1122.5 692 84.7
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 0.0e+00 1110.9 692 84.1
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.6e-307 1058.1 692 80.5
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 8.0e-272 940.3 693 70.3
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 5.7e-270 934.1 712 68.3
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.2e-267 926.4 693 69.6
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 4.5e-267 924.5 693 68.8
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.1e-265 919.8 693 68.5
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 5.7e-262 907.5 693 67.2
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 3.2e-260 901.7 693 67.1
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 4.6e-259 897.9 693 67.7
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 3.9e-258 894.8 692 67.5
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 5.0e-258 894.4 694 68.2
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.8e-256 888.6 693 67.1
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 6.2e-256 887.5 685 68.2
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.3e-255 885.6 693 68.0
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.6e-254 882.1 693 66.5
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.6e-254 882.1 693 65.5
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 4.4e-254 881.3 692 66.8
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.5e-254 880.6 696 66.1
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 7.5e-254 880.6 691 66.9
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.7e-253 879.4 693 65.4
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.9e-253 878.6 696 66.1
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-252 876.7 697 66.0
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 3.2e-252 875.2 693 66.2
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 4.1e-252 874.8 692 65.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 9.2e-252 873.6 695 66.0
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.6e-251 872.8 693 66.5
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.6e-251 871.3 694 65.6
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 7.8e-251 870.5 693 65.9
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.3e-250 869.8 693 64.9
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.3e-250 869.0 692 65.2
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.3e-250 869.0 694 65.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 3.9e-250 868.2 693 64.9
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.9e-250 868.2 693 65.9
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 5.0e-250 867.8 698 65.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 1.9e-249 865.9 698 64.6
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 3.3e-249 865.1 719 63.6
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.3e-249 864.8 692 65.0
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.2e-248 863.2 694 65.3
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.7e-248 861.3 693 65.7
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.2e-246 856.7 692 64.5
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.6e-246 855.5 696 65.7
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.6e-243 846.3 728 62.8
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 4.6e-243 844.7 705 62.7
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 3.0e-242 842.0 691 64.8
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 6.6e-242 840.9 691 64.1
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-241 839.7 706 62.3
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.9e-241 839.3 694 63.7
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.6e-241 837.8 645 67.0
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.8e-239 832.8 713 62.3
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 3.1e-239 832.0 684 63.5
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 7.6e-238 827.4 674 63.6
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 9.9e-238 827.0 685 62.9
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.1e-236 823.5 712 61.9
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 4.1e-236 821.6 693 62.3
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 4.1e-236 821.6 694 62.4
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 9.2e-236 820.5 684 62.7
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 1.6e-235 819.7 677 62.6
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 4.6e-235 818.1 694 62.0
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 4.6e-235 818.1 686 62.8
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.7e-234 816.2 695 61.4
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.3e-234 815.8 693 61.9
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.1e-233 813.5 745 59.1
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.9e-233 812.8 658 63.4
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.3e-233 812.0 695 62.0
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 7.3e-233 810.8 686 62.1
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 9.6e-233 810.4 680 63.4
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 9.6e-233 810.4 645 64.8
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 3.6e-232 808.5 685 62.3
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 6.2e-232 807.7 694 61.1
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 8.9e-231 803.9 693 61.3
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.2e-230 803.5 658 63.4
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 3.4e-230 802.0 662 62.5
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 7.6e-230 800.8 693 60.8
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.3e-229 800.0 660 63.3
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.7e-229 799.7 691 60.2
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 2.2e-229 799.3 693 61.2
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 3.8e-229 798.5 689 60.8
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-228 796.2 727 58.6
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 7.1e-228 794.3 693 61.2
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 9.3e-228 793.9 688 61.8
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.5e-227 792.0 695 60.7
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 7.8e-227 790.8 693 60.8
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.0e-226 790.4 687 61.1
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 8.7e-226 787.3 708 59.3
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.5e-225 785.8 693 59.9
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 2.5e-225 785.8 659 61.9
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 3.3e-225 785.4 694 59.5
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 6.2e-224 781.2 712 58.3
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 5.3e-223 778.1 693 59.9
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.2e-222 776.9 809 53.3
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 3.4e-222 775.4 608 65.1
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 5.8e-222 774.6 685 59.1
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 1.7e-221 773.1 693 59.6
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 3.8e-221 771.9 693 59.6
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 4.9e-221 771.5 694 59.7
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 5.4e-220 768.1 607 65.1
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 2.7e-219 765.8 692 60.0
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 2.3e-218 762.7 711 58.9
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 5.6e-217 758.1 646 61.1
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 9.6e-217 757.3 710 58.6
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.8e-216 755.7 693 58.3
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.8e-215 753.1 659 60.8
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.4e-215 752.7 651 60.5
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 7.6e-214 747.7 693 57.9
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 9.9e-214 747.3 669 60.1
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.7e-213 746.5 693 57.0
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 2.4e-212 742.7 676 58.1
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 1.2e-211 740.3 693 57.3
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.3e-210 736.9 800 51.8
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.1e-209 733.8 645 59.5
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.1e-207 727.2 655 58.5
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 6.9e-207 724.5 654 58.3
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.9e-207 724.5 693 56.4
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.5e-206 723.4 655 58.0
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 3.4e-206 722.2 639 58.5
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.1e-204 717.2 614 62.4
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 3.2e-204 715.7 645 58.1
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 9.3e-204 714.1 688 55.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 4.6e-203 711.8 673 58.4
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 6.0e-203 711.4 688 54.7
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 3.9e-202 708.8 663 57.9
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 3.9e-202 708.8 686 54.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.3e-200 703.7 641 60.1
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 4.8e-200 701.8 663 57.6
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 4.8e-200 701.8 663 57.6
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 6.5e-197 691.4 734 53.7
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 7.2e-196 688.0 621 59.4
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 2.3e-194 682.9 670 56.1
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.4e-190 669.1 709 52.3
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 7.7e-190 667.9 695 53.1
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 6.1e-187 658.3 743 51.0
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.8e-184 648.7 617 56.4
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 6.3e-184 648.3 635 55.1
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 3.8e-181 639.0 674 54.7
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 2.3e-154 550.1 550 55.5
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 6.3e-152 542.0 530 55.1
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-151 539.7 475 58.5
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.0e-146 522.7 432 66.9
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.7e-134 483.4 542 52.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.1e-122 444.9 403 58.6
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 7.6e-121 438.7 691 39.1
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.8e-115 420.2 356 62.4
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 2.3e-109 400.6 310 67.7
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.9e-102 375.6 327 61.5
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 4.2e-95 353.2 321 60.7
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 2.8e-91 340.5 361 49.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 4.9e-88 329.7 500 42.8
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 2.7e-86 323.9 380 50.8
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 1.0e-80 305.4 307 52.4
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.8e-69 268.1 198 73.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 5.3e-66 256.5 392 40.8
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 2.5e-63 247.7 277 49.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.3e-59 233.0 156 75.6
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 9.1e-58 229.2 608 30.3
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-56 225.3 262 50.0
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.8e-56 223.8 270 51.9
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 4.2e-55 220.3 692 28.9
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.1e-50 203.8 223 52.0
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 9.1e-50 202.6 366 37.4
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 7.2e-39 166.4 199 48.7
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.2e-35 154.8 187 47.6
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 4.5e-33 147.1 96 75.0
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 3.6e-30 137.5 135 52.6
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.4e-29 135.6 112 60.7
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.3e-29 134.8 83 77.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 6.8e-29 133.3 165 49.1
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-28 132.5 82 75.6
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-23 115.5 173 42.2
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-20 105.9 151 44.4
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 3.7e-19 100.9 67 74.6
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 4.9e-19 100.5 141 43.3
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 2.7e-17 94.7 86 58.1
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 1.1e-13 82.8 169 38.5
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.2e-11 75.1 117 41.9
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-10 72.8 88 46.6
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 3.2e-10 71.2 84 44.0
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 4.1e-10 70.9 51 62.7
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 5.4e-10 70.5 152 32.9
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 2.1e-09 68.6 67 56.7


User provided reference genes

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