Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 0.0e+00 1442.6 823 100.0
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 0.0e+00 1284.6 824 86.4
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 0.0e+00 1281.2 825 88.0
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 0.0e+00 1269.2 825 85.5
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 3.9e-311 1071.2 832 72.6
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.4e-292 1009.6 825 69.0
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 6.6e-287 990.7 856 70.0
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 5.6e-286 987.6 829 68.5
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.1e-284 981.9 836 66.9
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 7.8e-280 967.2 824 68.0
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 4.6e-272 941.4 823 66.8
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 7.9e-272 940.6 827 67.5
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.3e-271 939.9 818 66.3
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.7e-271 939.5 822 68.6
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.5e-270 935.6 827 65.4
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 3.3e-270 935.3 820 63.9
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 3.3e-270 935.3 822 68.2
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 4.8e-269 931.4 845 62.4
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.4e-268 929.9 843 64.7
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 3.4e-267 925.2 819 66.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 5.8e-267 924.5 822 66.7
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.6e-264 916.4 842 63.7
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 7.9e-264 914.1 820 67.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.3e-263 912.5 823 65.4
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.0e-263 912.1 822 64.8
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.9e-263 911.8 821 63.6
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 6.7e-263 911.0 807 64.3
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.1e-262 910.2 829 61.8
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 3.3e-262 908.7 829 61.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 5.6e-262 907.9 818 66.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 2.1e-261 906.0 821 64.4
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.8e-261 905.6 821 67.1
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 4.8e-261 904.8 818 62.2
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 6.2e-261 904.4 824 62.3
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 8.1e-261 904.0 831 64.3
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.4e-260 903.3 822 63.5
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 9.0e-260 900.6 822 62.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.2e-258 896.0 819 62.0
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 6.0e-256 887.9 828 63.9
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 3.0e-255 885.6 818 65.3
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 7.4e-254 880.9 828 61.0
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.3e-253 880.2 828 63.0
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.3e-253 880.2 824 61.9
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 8.2e-253 877.5 821 63.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-252 877.1 818 61.1
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.4e-252 875.9 827 62.4
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.1e-252 875.5 833 61.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.5e-251 873.2 837 60.5
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.6e-251 872.5 854 59.4
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.4e-251 872.1 840 60.7
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 4.5e-251 871.7 837 65.6
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 4.5e-251 871.7 823 61.6
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 5.8e-251 871.3 829 62.1
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.3e-250 870.2 825 61.6
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.9e-250 869.0 818 60.6
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 6.5e-250 867.8 818 60.9
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 8.4e-250 867.5 824 62.4
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.1e-249 867.1 822 65.1
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 7.9e-248 860.9 827 60.8
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 3.0e-247 859.0 821 59.9
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 7.4e-246 854.4 839 59.8
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 8.2e-245 850.9 823 61.0
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 5.9e-243 844.7 832 60.1
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.3e-242 843.6 820 58.9
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.3e-242 843.6 821 61.3
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.2e-242 842.8 818 59.0
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 2.9e-242 842.4 817 60.3
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 5.0e-242 841.6 813 62.9
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.4e-241 840.1 847 58.1
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 3.6e-240 835.5 809 62.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 4.6e-240 835.1 821 61.9
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.0e-239 833.9 839 57.7
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 8.8e-239 830.9 820 58.9
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.5e-238 829.3 824 60.8
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 4.8e-237 825.1 821 58.5
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.4e-236 822.8 835 58.9
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 2.6e-235 819.3 829 57.1
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.9e-235 818.1 823 59.3
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.1e-233 813.9 876 57.6
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.1e-230 803.9 784 59.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.1e-228 797.3 821 57.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-224 782.3 837 54.8
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 3.3e-222 775.8 818 56.7
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.1e-216 756.5 826 54.5
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.6e-214 749.6 768 56.4
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.2e-209 732.3 813 54.5
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 3.6e-208 729.2 689 64.9
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.0e-207 726.1 833 53.7
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 8.8e-207 724.5 829 54.4
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.0e-206 723.4 690 61.3
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.4e-204 717.2 834 53.1
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 2.9e-202 709.5 833 52.8
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 5.6e-201 705.3 834 52.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 9.5e-201 704.5 833 52.6
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.8e-200 703.0 830 51.9
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 5.2e-199 698.7 854 48.9
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 4.1e-196 689.1 828 52.1
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.7e-195 686.4 854 50.2
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 4.3e-193 679.1 830 51.3
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.6e-192 677.2 910 51.8
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.1e-192 676.8 824 49.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 8.0e-192 674.9 832 49.4
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.2e-188 662.9 815 49.9
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.5e-187 659.4 815 49.9
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 6.6e-186 655.2 815 49.9
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.1e-184 650.2 830 49.5
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 8.1e-184 648.3 816 50.9
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 7.5e-182 641.7 829 51.6
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.1e-169 601.3 788 48.2
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.6e-163 579.3 866 43.4
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 9.6e-161 571.6 428 68.9
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 3.1e-159 566.6 681 53.6
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.2e-157 560.5 588 60.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.9e-153 547.4 720 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 5.3e-151 539.3 739 47.8
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.0e-142 510.8 769 46.6
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.6e-136 491.1 875 43.2
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.4e-135 488.0 580 57.4
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.4e-134 483.4 453 62.0
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.8e-133 479.9 871 43.4
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 7.9e-131 472.2 484 59.9
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.9e-129 467.6 542 53.9
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 4.4e-121 439.9 559 53.3
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.1e-119 433.3 300 74.3
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 4.2e-116 423.3 336 65.2
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 3.6e-115 420.2 446 64.1
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 3.2e-100 370.5 516 45.7
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.8e-98 364.8 833 37.5
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.0e-98 364.0 265 70.6
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 3.4e-97 360.5 445 47.0
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 3.5e-94 350.5 905 35.7
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 1.7e-88 331.6 530 41.3
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.4e-87 328.6 673 40.0
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.5e-84 317.8 440 45.7
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 2.5e-84 317.8 816 34.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.1e-67 261.5 371 49.3
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.9e-60 238.4 505 32.1
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.6e-60 236.9 419 51.6
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.4e-58 232.3 199 66.3
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-52 211.5 421 39.2
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 1.6e-51 208.8 188 63.3
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.9e-42 176.8 329 41.9
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.6e-41 174.9 354 39.5
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 4.0e-34 151.0 137 57.7
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 4.0e-34 151.0 124 57.3
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 4.2e-31 141.0 137 58.4
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.3e-28 131.0 127 56.7
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 5.8e-25 120.6 117 57.3
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 5.8e-25 120.6 102 63.7
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 1.1e-23 116.3 93 62.4
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.9e-23 115.5 93 63.4
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.7e-21 106.7 250 38.0
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 4.3e-20 104.4 220 37.3
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.3e-19 100.5 86 58.1
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.2e-19 100.1 170 40.6
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-18 99.0 76 64.5
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 9.0e-18 96.7 86 57.0
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.0e-18 96.7 375 29.3
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-17 95.5 624 22.8
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-17 95.5 191 38.2
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.2e-16 92.0 282 31.6
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.8e-16 91.3 83 56.6
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 1.1e-15 89.7 184 52.2
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-15 88.2 78 62.8
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 7.2e-15 87.0 137 45.3
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-13 82.0 80 50.0
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.7e-11 75.9 72 54.2
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 6.3e-11 73.9 71 62.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.5e-09 69.3 58 53.4
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-09 68.9 163 36.2
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 2.6e-09 68.6 118 38.1
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 4.5e-09 67.8 50 72.0
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 6.5e-08 63.9 55 58.2
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.5e-08 63.9 65 52.3
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 6.5e-08 63.9 42 71.4
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.4e-07 62.8 89 49.4
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 2.5e-07 62.0 46 56.5
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.6e-06 59.3 57 56.1
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.6e-06 59.3 217 31.8
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 4.7e-06 57.8 214 31.3


User provided reference genes

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