Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 1.1e-40 169.5 85 100.0
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 9.3e-35 149.8 87 88.5
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 6.0e-34 147.1 87 86.2
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 4.3e-32 141.0 86 86.0
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.8e-25 119.0 86 67.4
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 3.7e-23 111.3 85 64.7
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 4.8e-23 110.9 86 61.6
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 8.2e-23 110.2 85 65.9
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 1.1e-22 109.8 86 60.5
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 1.1e-22 109.8 86 66.3
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 3.4e-21 104.8 86 59.3
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 4.5e-21 104.4 86 61.6
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 5.8e-21 104.0 86 58.1
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 5.8e-21 104.0 82 62.2
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 5.8e-21 104.0 86 61.6
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 7.6e-21 103.6 85 61.2
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 1.3e-20 102.8 85 58.8
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 1.7e-20 102.4 86 60.5
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 1.7e-20 102.4 84 60.7
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 2.2e-20 102.1 85 60.0
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 6.5e-20 100.5 86 58.1
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 8.4e-20 100.1 85 58.8
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 8.4e-20 100.1 85 65.9
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 1.4e-19 99.4 84 59.5
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 1.4e-19 99.4 85 57.6
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 3.2e-19 98.2 86 55.8
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 3.2e-19 98.2 86 55.8
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 3.2e-19 98.2 86 59.3
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 4.2e-19 97.8 86 58.1
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 4.2e-19 97.8 85 61.2
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 4.2e-19 97.8 85 58.8
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 4.2e-19 97.8 86 60.5
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 4.2e-19 97.8 86 55.8
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 4.2e-19 97.8 85 58.8
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 5.5e-19 97.4 85 58.8
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 9.3e-19 96.7 85 61.2
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 9.3e-19 96.7 86 59.3
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 9.3e-19 96.7 86 59.3
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 54.0
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 54.0
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 54.0
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 54.0
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 1.2e-18 96.3 87 54.0
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 1.2e-18 96.3 85 55.3
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 2.1e-18 95.5 87 58.6
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 2.7e-18 95.1 87 59.8
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 2.7e-18 95.1 85 57.6
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 4.6e-18 94.4 86 59.3
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 4.6e-18 94.4 85 55.3
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 6.0e-18 94.0 86 55.8
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 6.0e-18 94.0 85 56.5
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 7.9e-18 93.6 86 59.3
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 7.9e-18 93.6 86 54.7
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 7.9e-18 93.6 82 58.5
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 7.9e-18 93.6 81 56.8
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 7.9e-18 93.6 82 57.3
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.3e-17 92.8 84 59.5
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 1.3e-17 92.8 80 57.5
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.3e-17 92.8 87 57.5
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 1.3e-17 92.8 86 57.0
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 1.8e-17 92.4 87 52.9
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 2.3e-17 92.0 86 53.5
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 3.0e-17 91.7 92 55.4
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 3.0e-17 91.7 85 58.8
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 3.0e-17 91.7 85 55.3
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 3.9e-17 91.3 86 52.3
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 3.9e-17 91.3 86 52.3
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 3.9e-17 91.3 80 57.5
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 5.1e-17 90.9 86 55.8
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 5.1e-17 90.9 85 56.5
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 5.1e-17 90.9 86 55.8
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 1.1e-16 89.7 85 52.9
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 1.9e-16 89.0 86 57.0
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 1.9e-16 89.0 86 55.8
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 2.5e-16 88.6 86 55.8
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 2.5e-16 88.6 83 54.2
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 4.3e-16 87.8 90 53.3
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 7.4e-16 87.0 85 51.8
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 7.4e-16 87.0 85 55.3
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 9.7e-16 86.7 86 52.3
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 9.7e-16 86.7 86 52.3
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 1.3e-15 86.3 86 52.3
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 1.6e-15 85.9 86 53.5
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 1.6e-15 85.9 86 52.3
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 1.6e-15 85.9 88 48.9
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 2.2e-15 85.5 74 59.5
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 2.8e-15 85.1 85 56.5
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 2.8e-15 85.1 83 53.0
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 3.7e-15 84.7 85 47.1
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 6.3e-15 84.0 85 51.8
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 6.3e-15 84.0 87 52.9
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 1.4e-14 82.8 87 49.4
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 2.4e-14 82.0 89 48.3
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 2.4e-14 82.0 85 54.1
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 5.3e-14 80.9 79 48.1
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 6.9e-14 80.5 88 51.1
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 6.9e-14 80.5 85 50.6
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 2.0e-13 79.0 80 53.8
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 5.9e-13 77.4 74 52.7
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 2.9e-12 75.1 82 48.8
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 3.8e-12 74.7 82 48.8
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 1.6e-10 69.3 174 29.9
Lj1A192T37 Lonicera japonica HOM05D006634 ORTHO05D008282 6.1e-10 67.4 43 74.4
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 6.7e-09 63.9 66 45.5
Mapoly0137s0028 Marchantia polymorpha HOM05D006634 ORTHO05D008282 6.7e-09 63.9 93 43.0
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 4.3e-08 61.2 40 72.5
Pp3c7_7440 Physcomitrium patens HOM05D006634 ORTHO05D008282 4.3e-08 61.2 91 40.7
Actinidia20457 Actinidia chinensis HOM05D006634 ORTHO05D008282 2.2e-07 58.9 75 52.0
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 2.2e-07 58.9 38 78.9
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 4.8e-07 57.8 51 56.9
HPP92_022576 Vanilla planifolia HOM05D006634 ORTHO05D008282 2.4e-06 55.5 38 71.1
Potri.009G013701 Populus trichocarpa HOM05D006634 ORTHO05D008282 9.1e-06 53.5 36 77.8


User provided reference genes

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