Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 0.0e+00 1529.6 816 100.0
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 0.0e+00 1431.4 816 93.0
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 0.0e+00 1431.0 816 93.1
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 0.0e+00 1361.3 812 89.2
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1129.8 820 72.4
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1115.1 819 70.8
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1104.0 814 70.8
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1102.8 814 70.6
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1102.0 814 70.8
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1102.0 816 70.6
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1099.7 814 70.9
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1097.8 854 68.3
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1097.8 818 69.8
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1097.4 815 70.8
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1093.2 814 70.3
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1091.3 817 70.7
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1087.4 818 69.8
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1086.2 821 69.8
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1086.2 818 69.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1084.7 818 69.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1077.8 818 69.1
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 1.9e-310 1068.9 817 70.4
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.5e-310 1068.5 786 71.9
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 5.5e-310 1067.4 818 68.3
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.0e-309 1063.5 817 68.5
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.0e-308 1063.1 816 69.0
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.0e-308 1061.2 818 68.7
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 8.2e-306 1053.5 818 68.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 3.8e-303 1044.6 818 67.2
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 5.5e-302 1040.8 817 66.7
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 3.6e-301 1038.1 822 66.7
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 4.7e-301 1037.7 786 70.1
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 8.0e-301 1036.9 820 67.3
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 3.0e-300 1035.0 818 66.6
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 3.4e-299 1031.6 816 66.3
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 4.4e-299 1031.2 817 66.5
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.1e-297 1026.5 818 67.4
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 5.4e-297 1024.2 816 66.5
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 7.0e-297 1023.8 815 67.0
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 9.4e-294 1013.4 841 65.3
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 4.7e-293 1011.1 817 65.2
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 6.1e-293 1010.7 816 65.7
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.4e-292 1009.6 815 65.9
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.3e-292 1008.8 815 65.3
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 3.0e-292 1008.4 816 65.2
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 5.2e-292 1007.7 818 66.4
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 6.8e-292 1007.3 816 65.2
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.7e-290 1002.7 819 65.7
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 6.3e-290 1000.7 817 65.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 4.5e-288 994.6 815 64.8
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.0e-287 993.4 817 64.1
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.3e-287 993.0 819 64.5
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 1.3e-287 993.0 818 65.3
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 7.3e-286 987.3 815 63.8
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.2e-285 986.5 815 64.5
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 5.2e-284 981.1 814 63.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 8.9e-284 980.3 820 64.4
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.2e-283 979.9 888 60.8
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.6e-283 978.8 813 62.7
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 3.4e-283 978.4 817 63.8
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.4e-283 978.0 814 62.7
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 5.7e-283 977.6 826 63.8
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 5.7e-283 977.6 757 68.3
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 5.7e-283 977.6 819 64.7
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.3e-282 976.5 814 62.8
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.1e-281 971.5 813 62.2
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 5.4e-281 971.1 828 62.8
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 7.0e-281 970.7 813 62.2
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 9.2e-281 970.3 838 63.0
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 9.2e-281 970.3 843 62.8
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.6e-280 969.5 813 62.4
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 5.9e-280 967.6 813 62.4
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 3.9e-279 964.9 814 62.9
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 3.3e-278 961.8 818 63.1
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 8.0e-277 957.2 751 66.7
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.8e-276 956.1 753 67.1
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 4.0e-276 954.9 855 60.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 9.8e-275 950.3 829 60.8
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 7.0e-273 944.1 856 59.5
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 2.0e-272 942.6 815 63.1
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 7.8e-272 940.6 814 63.0
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.3e-271 939.9 812 61.6
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.4e-267 924.9 920 56.1
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 4.4e-267 924.9 815 61.3
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 9.8e-267 923.7 812 59.9
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 7.1e-265 917.5 829 60.3
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.1e-262 910.2 812 59.5
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 2.4e-244 849.4 817 55.3
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 9.0e-244 847.4 813 57.2
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 5.4e-241 838.2 818 55.3
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 7.4e-230 801.2 675 64.7
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.7e-226 790.0 816 53.7
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.4e-225 786.9 815 57.4
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.5e-222 776.9 663 62.9
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.3e-218 763.8 862 49.5
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-208 730.7 594 64.6
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 4.0e-183 646.0 618 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.0e-167 594.7 767 45.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 4.0e-167 592.8 833 43.1
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.0e-162 576.6 785 43.6
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 2.8e-152 543.5 538 55.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 5.8e-150 535.8 862 38.5
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 8.9e-143 511.9 779 38.6
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.1e-140 503.1 495 57.0
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 7.8e-139 498.8 834 38.8
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.1e-136 490.7 377 66.3
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.5e-134 484.6 403 64.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 6.4e-133 479.2 324 75.0
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.4e-103 381.7 480 47.5
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.1e-103 380.6 270 68.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 8.8e-98 362.5 255 69.0
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.1e-91 341.3 275 60.0
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.7e-88 331.6 307 58.0
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.2e-76 289.7 238 65.5
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 3.4e-57 227.6 810 25.8
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 5.7e-57 226.9 350 42.6
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 2.3e-50 204.9 219 51.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.2e-41 176.0 163 55.8
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.7e-40 172.2 124 71.0
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.3e-37 162.5 119 69.7
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.8e-35 154.8 832 21.0
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-33 149.1 93 77.4
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.1e-31 142.9 191 43.5
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 9.2e-31 139.8 101 71.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.9e-28 132.1 207 41.1
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.4e-23 115.9 125 50.4
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 9.2e-23 113.2 110 57.3
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-22 112.8 70 84.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 4.3e-20 104.4 70 65.7
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 4.3e-20 104.4 70 65.7
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 4.7e-19 100.9 86 58.1
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 4.4e-17 94.4 185 37.3
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.0e-13 83.2 79 58.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.6e-11 74.7 67 56.7
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 3.4e-09 68.2 69 52.2
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.7e-08 65.9 185 29.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 5.4e-07 60.8 47 66.0


User provided reference genes

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