Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G000970 Citrullus lanatus HOM05D003446 ORTHO05D003915 1.2e-98 363.2 183 100.0
MELO3C020570.2 Cucumis melo HOM05D003446 ORTHO05D003915 1.5e-61 240.0 143 86.0
CsaV3_1G035970 Cucumis sativus L. HOM05D003446 ORTHO05D003915 9.5e-53 210.7 109 93.6
Sed0017405 Sechium edule HOM05D003446 ORTHO05D003915 1.1e-48 197.2 109 87.2
CANSAT54G0299 Cannabis sativa HOM05D003446 ORTHO05D003915 5.1e-30 135.2 110 61.8
QL93p2004_0016 Quercus lobata HOM05D003446 ORTHO05D003915 7.4e-29 131.3 116 58.6
Thecc.09G307400 Theobroma cacao HOM05D003446 ORTHO05D003915 9.6e-29 131.0 112 59.8
Nitab4.5_0000880g0040 Nicotiana tabacum HOM05D003446 ORTHO05D003915 1.3e-28 130.6 108 60.2
QL01p027392 Quercus lobata HOM05D003446 ORTHO05D003915 1.3e-28 130.6 116 58.6
Cfa011633 Carpinus fangiana HOM05D003446 ORTHO05D003915 1.6e-28 130.2 112 60.7
COL.COLO4_19086 Corchorus olitorius HOM05D003446 ORTHO05D003915 1.6e-28 130.2 110 61.8
Potri.009G041100 Populus trichocarpa HOM05D003446 ORTHO05D003915 1.6e-28 130.2 111 57.7
Gohir.A03G048300 Gossypium hirsutum HOM05D003446 ORTHO05D003915 2.1e-28 129.8 109 58.7
Gorai.003G125200 Gossypium raimondii HOM05D003446 ORTHO05D003915 2.1e-28 129.8 109 58.7
Gohir.D03G118800 Gossypium hirsutum HOM05D003446 ORTHO05D003915 3.7e-28 129.0 109 58.7
Manes.02G122700 Manihot esculenta HOM05D003446 ORTHO05D003915 4.8e-28 128.6 114 59.6
Nn2g11351 Nelumbo nucifera HOM05D003446 ORTHO05D003915 8.1e-28 127.9 104 61.5
Peaxi162Scf00842g00015 Petunia axillaris HOM05D003446 ORTHO05D003915 8.1e-28 127.9 105 59.0
TWI79G0878 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 8.1e-28 127.9 109 62.4
TAR402G0007 Trochodendron aralioides HOM05D003446 ORTHO05D003915 8.1e-28 127.9 113 56.6
Medtr3g462220 Medicago truncatula HOM05D003446 ORTHO05D003915 1.1e-27 127.5 110 60.9
Solyc06g006000.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 1.1e-27 127.5 107 58.9
Sopen06g001980 Solanum pennellii HOM05D003446 ORTHO05D003915 1.1e-27 127.5 107 58.9
Peaxi162Scf00216g01419 Petunia axillaris HOM05D003446 ORTHO05D003915 1.4e-27 127.1 105 59.0
Rhsim13G0074100 Rhododendron simsii HOM05D003446 ORTHO05D003915 1.4e-27 127.1 104 59.6
Atru.chr3.4056 Acer truncatum HOM05D003446 ORTHO05D003915 2.4e-27 126.3 113 55.8
CiPaw.13G082900 Carya illinoinensis HOM05D003446 ORTHO05D003915 2.4e-27 126.3 109 61.5
CAN.G538.3 Capsicum annuum HOM05D003446 ORTHO05D003915 3.1e-27 125.9 107 59.8
Lalb_Chr15g0082611 Lupinus albus HOM05D003446 ORTHO05D003915 4.0e-27 125.6 113 57.5
Sabra09G0028900 Salix brachista HOM05D003446 ORTHO05D003915 4.0e-27 125.6 111 56.8
AUR62001704 Chenopodium quinoa HOM05D003446 ORTHO05D003915 5.3e-27 125.2 109 58.7
Prupe.6G063000 Prunus persica HOM05D003446 ORTHO05D003915 6.9e-27 124.8 107 59.8
SGA_v2.0_scaffold77G25285 Striga asiatica HOM05D003446 ORTHO05D003915 9.0e-27 124.4 104 60.6
PGSC0003DMG400020844 Solanum tuberosum HOM05D003446 ORTHO05D003915 1.2e-26 124.0 107 57.9
arahy.Tifrunner.gnm1.ann1.TI8HRK Arachis hypogaea HOM05D003446 ORTHO05D003915 1.5e-26 123.6 105 58.1
Lj6g0014075 Lotus japonicus HOM05D003446 ORTHO05D003915 1.5e-26 123.6 111 59.5
TPR.G30108 Trifolium pratense HOM05D003446 ORTHO05D003915 2.0e-26 123.2 110 59.1
Eucgr.J01950 Eucalyptus grandis HOM05D003446 ORTHO05D003915 2.6e-26 122.9 108 60.2
arahy.Tifrunner.gnm1.ann1.6X3X3D Arachis hypogaea HOM05D003446 ORTHO05D003915 3.4e-26 122.5 105 57.1
Dinv14473 Davidia involucrata HOM05D003446 ORTHO05D003915 3.4e-26 122.5 112 58.0
HanXRQChr05g0135531 Helianthus annuus HOM05D003446 ORTHO05D003915 3.4e-26 122.5 110 58.2
MD03G1078000 Malus domestica HOM05D003446 ORTHO05D003915 3.4e-26 122.5 109 60.6
Phvul.006G063800 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 3.4e-26 122.5 111 59.5
EL10Ac7g16108 Beta vulgaris HOM05D003446 ORTHO05D003915 7.6e-26 121.3 109 58.7
Psat5g162520 Pisum sativum HOM05D003446 ORTHO05D003915 9.9e-26 120.9 111 59.5
CiPaw.13G083100 Carya illinoinensis HOM05D003446 ORTHO05D003915 1.3e-25 120.6 110 59.1
Duzib168G0523 Durio zibethinus HOM05D003446 ORTHO05D003915 1.3e-25 120.6 112 58.0
Glyma.18G067500 Glycine max HOM05D003446 ORTHO05D003915 1.3e-25 120.6 113 58.4
FAN16G2611 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.7e-25 120.2 109 59.6
MD11G1082600 Malus domestica HOM05D003446 ORTHO05D003915 1.7e-25 120.2 109 59.6
VMungo0540G2401 Vigna mungo HOM05D003446 ORTHO05D003915 1.7e-25 120.2 111 56.8
Aqoxy1G00728 Aquilegia oxysepala HOM05D003446 ORTHO05D003915 2.9e-25 119.4 106 58.5
FAN21G1385 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.9e-25 119.4 109 59.6
FAN25G0028 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.9e-25 119.4 109 58.7
RcHm_v2.0_Chr5g0068081 Rosa chinensis HOM05D003446 ORTHO05D003915 2.9e-25 119.4 111 56.8
Actinidia25129 Actinidia chinensis HOM05D003446 ORTHO05D003915 3.8e-25 119.0 111 56.8
Ca_14891_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 3.8e-25 119.0 110 56.4
Nitab4.5_0002405g0050 Nicotiana tabacum HOM05D003446 ORTHO05D003915 3.8e-25 119.0 105 58.1
Oeu035016.1 Olea europaea HOM05D003446 ORTHO05D003915 3.8e-25 119.0 109 57.8
HPP92_015338 Vanilla planifolia HOM05D003446 ORTHO05D003915 3.8e-25 119.0 105 58.1
SalBow2G2679 Salvia bowleyana HOM05D003446 ORTHO05D003915 4.9e-25 118.6 104 58.7
ECA236G4759 Erigeron canadensis HOM05D003446 ORTHO05D003915 6.4e-25 118.2 111 56.8
FvH4_3g37870 Fragaria vesca HOM05D003446 ORTHO05D003915 6.4e-25 118.2 109 59.6
FAN11G3995 Fragaria x ananassa HOM05D003446 ORTHO05D003915 6.4e-25 118.2 109 59.6
AUR62020077 Chenopodium quinoa HOM05D003446 ORTHO05D003915 8.4e-25 117.9 103 57.3
DCAR_018941 Daucus carota HOM05D003446 ORTHO05D003915 8.4e-25 117.9 165 43.6
PGR119G0877 Punica granatum HOM05D003446 ORTHO05D003915 2.4e-24 116.3 110 56.4
GSVIVG01024811001 Vitis vinifera HOM05D003446 ORTHO05D003915 5.5e-24 115.2 110 53.6
Lj1A143T43 Lonicera japonica HOM05D003446 ORTHO05D003915 7.1e-24 114.8 111 56.8
Cc01_g13730 Coffea canephora HOM05D003446 ORTHO05D003915 9.3e-24 114.4 109 55.0
vmacro03001 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 9.3e-24 114.4 109 52.3
CSS0014722 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 3.5e-23 112.5 111 53.2
CDE04G1890 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 4.6e-23 112.1 104 53.8
Hund18865 Selenicereus undatus HOM05D003446 ORTHO05D003915 4.6e-23 112.1 103 58.3
Actinidia38843 Actinidia chinensis HOM05D003446 ORTHO05D003915 1.0e-22 110.9 115 53.9
Sc06g0007160 Simmondsia chinensis HOM05D003446 ORTHO05D003915 1.3e-22 110.5 109 52.3
CDE03G0004 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 2.3e-22 109.8 104 51.0
ATR0618G355 Amborella trichopoda HOM05D003446 ORTHO05D003915 5.1e-22 108.6 106 52.8
Migut.N00812 Erythranthe guttata HOM05D003446 ORTHO05D003915 5.1e-22 108.6 108 54.6
Cpa.g.sc112.75 Carica papaya HOM05D003446 ORTHO05D003915 6.7e-22 108.2 108 53.7
MSTRG.17869 Avicennia marina HOM05D003446 ORTHO05D003915 1.5e-21 107.1 104 51.9
unitig_26.g10204 Utricularia gibba HOM05D003446 ORTHO05D003915 5.6e-21 105.1 104 54.8
Os03g0265900 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 1.3e-20 104.0 104 56.7
Haze_24238 Corylus avellana HOM05D003446 ORTHO05D003915 2.1e-20 103.2 112 52.7
unitig_749.g13766 Utricularia gibba HOM05D003446 ORTHO05D003915 6.2e-20 101.7 109 52.3
Ciclev10029307m.g Citrus clementina HOM05D003446 ORTHO05D003915 1.4e-19 100.5 115 47.0
Glyma.08G334500 Glycine max HOM05D003446 ORTHO05D003915 1.8e-19 100.1 110 52.7
PSO384G2641 Papaver somniferum HOM05D003446 ORTHO05D003915 5.8e-18 95.1 116 47.4
SEGI_14129 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 5.8e-18 95.1 107 49.5
Lsat_1_v5_gn_8_72121 Lactuca sativa HOM05D003446 ORTHO05D003915 7.6e-18 94.7 143 42.7
PSO339G6551 Papaver somniferum HOM05D003446 ORTHO05D003915 1.7e-17 93.6 116 47.4
QL06p039988 Quercus lobata HOM05D003446 ORTHO05D003915 1.5e-13 80.5 106 41.5
GSVIVG01000208001 Vitis vinifera HOM05D003446 ORTHO05D003915 1.9e-13 80.1 108 40.7
Zm00001eb288700 Zea mays HOM05D003446 ORTHO05D003915 1.9e-13 80.1 110 43.6
FAN28G0024 Fragaria x ananassa HOM05D003446 ORTHO05D003915 5.7e-13 78.6 103 39.8
Os05g0451300 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 5.7e-13 78.6 105 45.7
Haze_15338 Corylus avellana HOM05D003446 ORTHO05D003915 9.7e-13 77.8 106 43.4
Dinv30043 Davidia involucrata HOM05D003446 ORTHO05D003915 1.3e-12 77.4 104 38.5
TAR376G0778 Trochodendron aralioides HOM05D003446 ORTHO05D003915 1.3e-12 77.4 108 39.8
MBI01_g34893_MAGBIO Magnolia biondii HOM05D003446 ORTHO05D003915 1.6e-12 77.0 74 54.1
CiPaw.01G009700 Carya illinoinensis HOM05D003446 ORTHO05D003915 3.7e-12 75.9 106 40.6
Dinv26875 Davidia involucrata HOM05D003446 ORTHO05D003915 1.1e-11 74.3 104 38.5
FvH4_1g16910 Fragaria vesca HOM05D003446 ORTHO05D003915 1.4e-11 73.9 103 37.9
Lsat_1_v5_gn_4_162940 Lactuca sativa HOM05D003446 ORTHO05D003915 1.4e-11 73.9 107 38.3
Cfa004075 Carpinus fangiana HOM05D003446 ORTHO05D003915 1.8e-11 73.6 108 42.6
Gohir.D12G071400 Gossypium hirsutum HOM05D003446 ORTHO05D003915 2.4e-11 73.2 104 38.5
RcHm_v2.0_Chr2g0106961 Rosa chinensis HOM05D003446 ORTHO05D003915 2.4e-11 73.2 103 37.9
THA.LOC104819864 Tarenaya hassleriana HOM05D003446 ORTHO05D003915 2.4e-11 73.2 104 37.5
AT4G37300 Arabidopsis thaliana HOM05D003446 ORTHO05D003915 3.1e-11 72.8 110 40.0
CARHR245700 Cardamine hirsuta HOM05D003446 ORTHO05D003915 3.1e-11 72.8 104 38.5
Lj2g0019205 Lotus japonicus HOM05D003446 ORTHO05D003915 4.1e-11 72.4 107 42.1
Duzib187G1258 Durio zibethinus HOM05D003446 ORTHO05D003915 6.9e-11 71.6 106 36.8
Gorai.008G079000 Gossypium raimondii HOM05D003446 ORTHO05D003915 6.9e-11 71.6 104 38.5
SEGI_03543 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 6.9e-11 71.6 108 38.0
Aa31LG6G14170 Aethionema arabicum HOM05D003446 ORTHO05D003915 9.0e-11 71.2 111 39.6
Actinidia16456 Actinidia chinensis HOM05D003446 ORTHO05D003915 1.2e-10 70.9 106 42.5
Gohir.A12G074100 Gossypium hirsutum HOM05D003446 ORTHO05D003915 1.2e-10 70.9 104 38.5
PGR004G1858 Punica granatum HOM05D003446 ORTHO05D003915 1.2e-10 70.9 105 39.0
Actinidia21252 Actinidia chinensis HOM05D003446 ORTHO05D003915 1.5e-10 70.5 106 44.3
TAR381G0964 Trochodendron aralioides HOM05D003446 ORTHO05D003915 1.5e-10 70.5 111 38.7
AL7G13540 Arabidopsis lyrata HOM05D003446 ORTHO05D003915 2.0e-10 70.1 110 39.1
BolC7t46649H Brassica oleracea HOM05D003446 ORTHO05D003915 2.6e-10 69.7 104 35.6
Carub.0007s0298 Capsella rubella HOM05D003446 ORTHO05D003915 2.6e-10 69.7 104 38.5
Hma1.2p1_0017F.1_g011890 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 2.6e-10 69.7 106 39.6
VMungo1215G1902 Vigna mungo HOM05D003446 ORTHO05D003915 2.6e-10 69.7 105 41.0
C07p62330 Brassica napus HOM05D003446 ORTHO05D003915 3.4e-10 69.3 104 35.6
A01p01670 Brassica napus HOM05D003446 ORTHO05D003915 4.5e-10 68.9 107 36.4
BcaNung02048 Brassica carinata HOM05D003446 ORTHO05D003915 5.9e-10 68.6 104 35.6
BraA01t00157Z Brassica rapa HOM05D003446 ORTHO05D003915 5.9e-10 68.6 107 36.4
Eucgr.I00795 Eucalyptus grandis HOM05D003446 ORTHO05D003915 5.9e-10 68.6 106 39.6
Phvul.002G014901 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 5.9e-10 68.6 104 39.4
EL10Ac6g15684 Beta vulgaris HOM05D003446 ORTHO05D003915 7.7e-10 68.2 104 38.5
FAN19G2839 Fragaria x ananassa HOM05D003446 ORTHO05D003915 7.7e-10 68.2 103 36.9
Hund16368 Selenicereus undatus HOM05D003446 ORTHO05D003915 7.7e-10 68.2 104 39.4
C01p01830 Brassica napus HOM05D003446 ORTHO05D003915 1.0e-09 67.8 107 36.4
Hma1.2p1_3153F.1_g333290 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 1.0e-09 67.8 106 39.6
Nn5g30439 Nelumbo nucifera HOM05D003446 ORTHO05D003915 1.0e-09 67.8 109 39.4
Thecc.01G064800 Theobroma cacao HOM05D003446 ORTHO05D003915 1.0e-09 67.8 109 34.9
Thhalv10026399m.g Eutrema salsugineum HOM05D003446 ORTHO05D003915 1.3e-09 67.4 110 38.2
Glyma.01G190300 Glycine max HOM05D003446 ORTHO05D003915 1.3e-09 67.4 105 41.9
Prupe.6G227700 Prunus persica HOM05D003446 ORTHO05D003915 1.3e-09 67.4 110 37.3
AagrBONN_evm.TU.Sc2ySwM_228.1259 Anthoceros agrestis HOM05D001230 ORTHO05D001067 2.2e-09 66.6 105 42.9
Cc07_g06490 Coffea canephora HOM05D003446 ORTHO05D003915 2.2e-09 66.6 107 36.4
Eucgr.I00751 Eucalyptus grandis HOM05D003446 ORTHO05D003915 2.2e-09 66.6 106 39.6
Manes.13G117600 Manihot esculenta HOM05D003446 ORTHO05D003915 2.9e-09 66.2 106 37.7
SGA_v2.0_scaffold95G28709 Striga asiatica HOM05D003446 ORTHO05D003915 2.9e-09 66.2 68 50.0
Cpa.g.sc6.90 Carica papaya HOM05D003446 ORTHO05D003915 6.5e-09 65.1 108 37.0
Sabra07G0044000 Salix brachista HOM05D003446 ORTHO05D003915 6.5e-09 65.1 109 37.6
MELO3C019205.2 Cucumis melo HOM05D003446 ORTHO05D003915 8.5e-09 64.7 105 37.1
vmacro17976 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 8.5e-09 64.7 105 39.0
Duzib147G1454 Durio zibethinus HOM05D003446 ORTHO05D003915 1.1e-08 64.3 105 35.2
Peaxi162Scf00945g00123 Petunia axillaris HOM05D003446 ORTHO05D003915 1.1e-08 64.3 106 36.8
TWI53G2047 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 1.4e-08 63.9 109 35.8
arahy.Tifrunner.gnm1.ann1.CXZ5TN Arachis hypogaea HOM05D003446 ORTHO05D003915 1.9e-08 63.5 113 37.2
MSTRG.2847 Avicennia marina HOM05D003446 ORTHO05D003915 1.9e-08 63.5 105 37.1
BcaNung02537 Brassica carinata HOM05D003446 ORTHO05D003915 1.9e-08 63.5 107 34.6
BcaNung02538 Brassica carinata HOM05D003446 ORTHO05D003915 1.9e-08 63.5 107 34.6
BolC1t00175H Brassica oleracea HOM05D003446 ORTHO05D003915 1.9e-08 63.5 107 34.6
Ciclev10026594m.g Citrus clementina HOM05D003446 ORTHO05D003915 1.9e-08 63.5 106 37.7
Sp7g34970 Schrenkiella parvula HOM05D003446 ORTHO05D003915 2.5e-08 63.2 104 34.6
TPR.G26863 Trifolium pratense HOM05D003446 ORTHO05D003915 3.2e-08 62.8 107 38.3
Medtr5g016450 Medicago truncatula HOM05D003446 ORTHO05D003915 4.2e-08 62.4 105 40.0
HanXRQChr15g0491841 Helianthus annuus HOM05D003446 ORTHO05D003915 5.5e-08 62.0 106 38.7
CSS0024799 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 7.2e-08 61.6 103 38.8
arahy.Tifrunner.gnm1.ann1.SZPL62 Arachis hypogaea HOM05D003446 ORTHO05D003915 1.2e-07 60.8 107 35.5
Mapoly0014s0108 Marchantia polymorpha HOM05D003446 ORTHO05D003915 1.2e-07 60.8 119 37.8
Psat2g168880 Pisum sativum HOM05D003446 ORTHO05D003915 1.6e-07 60.5 110 36.4
Nitab4.5_0001439g0030 Nicotiana tabacum HOM05D003446 ORTHO05D003915 2.1e-07 60.1 105 37.1
Potri.007G049800 Populus trichocarpa HOM05D003446 ORTHO05D003915 2.1e-07 60.1 109 34.9
PGSC0003DMG400024982 Solanum tuberosum HOM05D003446 ORTHO05D003915 2.7e-07 59.7 108 39.8
MD02G1179600 Malus domestica HOM05D003446 ORTHO05D003915 3.6e-07 59.3 105 34.3
CSS0013529 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 4.6e-07 58.9 107 36.4
Sopen02g037450 Solanum pennellii HOM05D003446 ORTHO05D003915 4.6e-07 58.9 104 37.5
CsaV3_2G035470 Cucumis sativus L. HOM05D003446 ORTHO05D003915 6.1e-07 58.5 106 36.8
Oeu015921.1 Olea europaea HOM05D003446 ORTHO05D003915 7.9e-07 58.2 106 34.9
Glyma.11G051900 Glycine max HOM05D003446 ORTHO05D003915 1.4e-06 57.4 98 38.8
ClCG02G008200 Citrullus lanatus HOM05D003446 ORTHO05D003915 3.0e-06 56.2 107 34.6
Solyc02g092880.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 3.9e-06 55.8 104 36.5
Nn1g04669 Nelumbo nucifera HOM05D003446 ORTHO05D003915 5.1e-06 55.5 112 33.0


User provided reference genes

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