Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.8e-202 707.6 354 100.0
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.3e-118 428.7 285 81.1
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 7.4e-118 427.9 333 73.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 3.5e-112 409.1 286 76.6
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 6.7e-87 325.1 205 81.5
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 5.3e-84 315.5 221 75.6
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 9.1e-84 314.7 219 74.9
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.2e-82 310.1 200 81.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.5e-81 306.6 238 70.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 5.5e-81 305.4 200 76.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.5e-81 305.4 204 77.0
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 5.5e-81 305.4 236 69.1
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.2e-80 304.3 200 77.5
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.0e-79 301.2 234 67.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.4e-79 300.8 198 78.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.0e-79 299.7 199 77.4
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 3.9e-79 299.3 198 77.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.2e-79 298.9 199 75.9
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 5.2e-79 298.9 235 68.5
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 6.7e-79 298.5 216 72.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 8.8e-79 298.1 198 77.3
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.1e-78 297.7 199 75.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.0e-78 297.0 201 75.6
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.6e-78 296.6 199 75.4
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 9.7e-78 294.7 197 75.1
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 9.7e-78 294.7 199 77.9
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.3e-77 294.3 216 71.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.2e-77 293.5 197 75.6
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.8e-77 293.1 203 72.4
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.8e-77 293.1 195 75.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.8e-77 292.4 219 69.4
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.2e-77 291.6 197 75.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 8.2e-77 291.6 198 73.7
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.1e-76 291.2 197 75.1
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.1e-76 291.2 220 69.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.4e-76 290.8 221 69.2
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 3.1e-76 289.7 238 67.2
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.1e-76 289.7 198 76.8
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.1e-76 289.3 197 74.1
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 4.1e-76 289.3 209 72.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 5.3e-76 288.9 185 78.4
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 5.3e-76 288.9 208 73.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.3e-76 288.9 208 73.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.3e-76 288.9 208 73.6
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 5.3e-76 288.9 212 72.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 5.3e-76 288.9 209 73.7
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 7.0e-76 288.5 199 73.4
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 7.0e-76 288.5 199 73.4
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.0e-76 288.5 200 74.0
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 7.0e-76 288.5 209 72.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 7.0e-76 288.5 200 73.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.6e-75 287.3 238 66.8
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.0e-75 287.0 196 73.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 2.6e-75 286.6 204 72.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.5e-75 286.2 233 66.1
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.5e-75 286.2 208 72.6
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.5e-75 285.8 208 72.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 5.9e-75 285.4 199 76.4
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 7.7e-75 285.0 207 70.0
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.0e-74 284.6 208 72.1
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-74 284.3 222 65.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.2e-74 283.5 282 57.8
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 5.0e-74 282.3 199 72.9
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 5.0e-74 282.3 199 72.9
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.1e-73 281.2 198 75.8
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-73 280.8 224 67.4
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.9e-73 280.4 212 69.8
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.9e-73 280.4 212 69.8
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.9e-73 280.4 235 66.0
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.5e-73 280.0 204 70.1
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.2e-73 279.3 193 76.2
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 5.5e-73 278.9 224 67.0
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 9.4e-73 278.1 224 66.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 9.4e-73 278.1 196 75.5
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 2.1e-72 276.9 200 71.5
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.1e-72 276.9 254 62.6
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.6e-72 276.2 207 73.4
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.1e-72 275.4 202 69.3
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.4e-71 274.2 234 64.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-71 274.2 199 71.9
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.4e-71 274.2 198 72.2
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.8e-71 273.9 177 80.8
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.3e-71 273.5 200 70.5
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 8.8e-71 271.6 232 60.8
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 4.4e-70 269.2 195 71.3
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 9.7e-70 268.1 233 67.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 9.7e-70 268.1 196 68.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.3e-69 267.7 195 70.8
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.7e-69 267.3 240 66.2
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.2e-67 261.2 203 68.0
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-67 261.2 203 70.9
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 7.7e-67 258.5 198 66.7
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 7.7e-67 258.5 200 66.5
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.3e-66 257.7 203 70.0
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.5e-66 255.4 203 70.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 3.2e-65 253.1 205 66.3
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 4.2e-65 252.7 208 69.7
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 7.2e-65 251.9 214 63.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.6e-64 250.8 164 80.5
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.7e-64 250.0 192 69.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 8.0e-64 248.4 199 65.8
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.0e-63 246.5 205 62.0
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 6.8e-63 245.4 208 65.9
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.0e-62 243.8 198 67.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.0e-62 243.8 195 66.2
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.7e-61 240.7 213 59.2
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.4e-60 237.7 209 62.2
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.4e-60 237.7 204 64.2
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.4e-60 236.9 214 58.9
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.1e-60 236.5 213 65.3
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.1e-60 235.0 213 58.7
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-59 234.6 237 55.3
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.6e-59 234.2 218 59.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.0e-59 233.8 218 61.9
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.5e-59 232.6 213 64.3
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.5e-59 232.6 213 64.3
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 4.5e-59 232.6 193 66.3
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-58 230.7 162 75.3
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.9e-58 229.9 162 74.7
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.9e-58 229.9 162 74.7
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 3.8e-58 229.6 218 59.2
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 3.8e-58 229.6 199 61.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 5.0e-58 229.2 172 71.5
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 6.6e-58 228.8 199 60.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.6e-58 228.4 212 62.3
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.1e-57 228.0 177 70.6
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.5e-57 226.9 193 64.2
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.4e-55 221.1 198 60.1
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.8e-55 220.7 230 53.0
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.2e-55 219.2 206 59.7
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.7e-53 214.2 148 77.0
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.4e-52 211.1 205 59.5
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 8.0e-48 195.3 172 64.0
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.4e-46 189.9 128 78.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.9e-44 184.1 198 55.1
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.0e-42 176.0 187 52.4
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.1e-41 174.9 185 53.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.5e-41 173.7 197 51.3
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.1e-39 168.3 183 53.0
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 7.5e-38 162.2 161 54.7
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 4.9e-37 159.5 115 68.7
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.1e-36 158.3 192 47.4
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.2e-36 156.8 115 74.8
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.5e-33 147.1 197 44.7
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.5e-33 147.1 189 48.1
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.6e-32 144.4 189 46.6
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 6.2e-32 142.5 97 75.3
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.7e-29 133.3 95 73.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.4e-28 130.6 87 73.6
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.0e-26 123.6 196 40.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-23 114.8 90 63.3
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 5.6e-17 92.8 88 54.5
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.6e-16 91.3 84 58.3
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 9.9e-14 82.0 60 61.7
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 3.8e-13 80.1 60 60.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.2e-12 76.6 152 42.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.0e-07 58.9 80 45.0
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 7.6e-06 55.8 85 41.2


User provided reference genes

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