Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.8e-140 501.5 254 100.0
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.6e-127 458.4 254 90.6
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.2e-125 453.4 254 90.9
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 5.1e-121 438.0 250 87.2
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 8.2e-95 350.9 253 69.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.1e-94 349.0 251 68.9
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 9.1e-94 347.4 256 69.9
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.4e-93 345.5 251 71.7
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-92 344.0 251 71.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.9e-92 342.4 253 70.8
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.0e-92 341.7 251 71.3
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.5e-92 340.9 252 70.6
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.1e-91 340.5 257 70.4
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.9e-91 339.7 255 68.6
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.5e-91 338.2 251 67.3
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 7.2e-91 337.8 284 64.1
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 9.4e-91 337.4 252 69.0
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 3.6e-90 335.5 252 67.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.0e-89 332.4 254 67.3
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.9e-89 332.0 254 66.9
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.9e-89 332.0 250 69.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 5.1e-89 331.6 251 68.9
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 8.8e-89 330.9 254 69.3
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 8.8e-89 330.9 252 65.1
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-88 330.5 249 66.7
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-88 330.5 249 66.7
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.0e-88 329.7 251 64.9
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.4e-88 328.6 251 66.9
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 5.7e-88 328.2 250 68.8
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 9.7e-88 327.4 251 67.7
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.7e-87 326.6 253 68.8
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 2.2e-87 326.2 253 66.0
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.1e-86 323.9 270 64.8
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.1e-86 323.9 252 67.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 1.8e-86 323.2 276 65.2
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.8e-86 323.2 212 76.9
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.8e-86 323.2 248 67.7
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.4e-86 322.8 252 64.7
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.3e-86 321.6 252 64.3
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 5.3e-86 321.6 255 65.1
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.6e-85 320.1 248 66.9
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.0e-85 319.7 250 66.8
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-85 319.3 250 65.6
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 3.5e-85 318.9 251 64.1
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 5.9e-85 318.2 256 63.7
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 7.7e-85 317.8 251 65.7
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 7.7e-85 317.8 217 74.2
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.3e-84 317.0 251 63.3
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.7e-84 316.6 253 64.4
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.2e-84 316.2 254 63.8
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.2e-84 316.2 254 66.1
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.5e-84 314.7 252 65.5
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-83 313.5 212 71.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.5e-83 312.8 255 63.1
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 5.5e-83 311.6 251 62.2
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.2e-82 310.5 251 64.9
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.1e-82 309.7 258 65.1
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.1e-82 309.7 269 60.6
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.7e-82 309.3 251 62.9
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.1e-82 308.1 231 66.2
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 6.1e-82 308.1 254 63.0
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.1e-82 308.1 273 60.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 8.0e-82 307.8 251 63.7
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.8e-81 306.6 254 63.8
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.0e-81 305.8 250 62.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 4.0e-81 305.4 251 63.3
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 5.2e-81 305.1 250 64.0
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 6.7e-81 304.7 247 63.2
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 8.8e-81 304.3 250 63.2
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 8.8e-81 304.3 251 60.2
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.8e-81 304.3 256 64.1
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.5e-80 303.5 256 63.7
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.5e-80 303.5 197 74.6
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.0e-80 303.1 254 62.2
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.6e-80 302.8 247 63.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.6e-80 302.8 254 62.2
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 3.3e-80 302.4 250 63.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 4.4e-80 302.0 247 63.2
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 4.4e-80 302.0 250 62.8
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.4e-80 302.0 250 62.4
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 5.7e-80 301.6 247 63.6
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 5.7e-80 301.6 247 63.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 7.5e-80 301.2 250 62.0
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 9.7e-80 300.8 250 62.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.3e-79 300.4 251 64.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 6.3e-79 298.1 251 61.8
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 8.2e-79 297.7 249 62.7
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.4e-78 296.2 250 63.2
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.0e-77 293.1 247 63.2
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.0e-76 290.8 185 74.6
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.0e-76 290.8 263 59.3
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.8e-76 288.9 249 62.7
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.7e-74 282.7 168 80.4
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.6e-74 282.3 274 58.0
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 1.8e-73 280.0 169 81.7
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.8e-71 272.7 214 67.8
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.1e-70 270.8 253 56.1
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.1e-70 270.8 250 56.0
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.8e-70 270.0 254 53.9
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 7.0e-70 268.1 347 47.6
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 2.0e-69 266.5 228 60.1
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 2.7e-69 266.2 181 72.9
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 7.7e-69 264.6 251 57.4
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.6e-66 256.9 216 63.4
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.6e-66 255.8 215 60.9
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.8e-65 253.4 251 52.2
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-65 253.1 183 68.3
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.0e-65 252.7 180 66.7
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.2e-64 250.8 182 67.6
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 9.8e-64 247.7 257 56.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 4.5e-61 238.8 245 52.7
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 5.0e-60 235.3 251 50.6
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.1e-59 234.2 142 77.5
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.8e-58 229.6 189 60.3
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 4.9e-55 218.8 180 64.4
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 6.4e-55 218.4 185 61.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.0e-53 213.4 185 61.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.3e-52 210.7 191 54.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.3e-52 210.7 162 63.0
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.7e-52 210.3 184 62.5
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.2e-50 201.8 204 56.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.2e-48 197.6 195 56.9
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.7e-45 186.4 158 62.7
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 4.6e-45 185.7 246 40.7
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 3.9e-44 182.6 192 47.9
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 3.3e-43 179.5 188 55.3
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 3.3e-43 179.5 204 50.5
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.1e-41 174.5 156 57.7
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 1.4e-41 174.1 158 62.0
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.5e-40 170.6 112 75.0
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.1e-35 154.5 184 53.3
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.5e-35 154.1 97 78.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 4.3e-35 152.5 128 60.9
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.3e-35 152.5 164 50.6
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.1e-33 147.9 95 73.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 5.2e-33 145.6 126 60.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 7.6e-32 141.7 115 64.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 3.8e-31 139.4 115 62.6
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.4e-30 137.5 179 44.1
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 3.3e-27 126.3 130 53.8
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 3.3e-27 126.3 130 53.8
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.8e-25 120.6 79 74.7
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-23 114.0 181 37.6
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 7.8e-21 105.1 67 68.7
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 3.6e-18 96.3 66 68.2
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.8e-18 95.9 65 67.7
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 6.2e-18 95.5 66 69.7
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-16 90.9 102 52.0
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.5e-16 90.9 128 47.7
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.9e-15 85.9 102 51.0
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.1e-13 80.5 64 60.9
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.3e-12 77.0 115 47.0
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 4.9e-07 59.3 34 82.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.4e-06 57.0 35 77.1


User provided reference genes

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