Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 7.1e-165 583.9 312 100.0
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 8.2e-121 437.6 280 88.9
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.4e-117 426.8 280 87.1
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.3e-110 403.7 254 89.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.7e-110 403.3 255 89.8
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.2e-110 402.9 255 89.8
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 5.0e-110 401.7 255 89.8
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.5e-110 401.0 255 90.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.1e-109 400.6 255 90.2
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 2.5e-109 399.4 255 89.8
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.2e-109 399.1 255 89.8
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 5.5e-109 398.3 255 88.6
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.5e-109 398.3 255 89.8
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 5.5e-109 398.3 255 88.6
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 7.2e-109 397.9 254 88.2
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 9.4e-109 397.5 255 89.0
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.2e-108 397.1 255 89.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.6e-108 396.7 281 81.1
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.1e-108 396.4 255 87.8
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.7e-108 396.0 255 89.4
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.6e-108 395.6 281 81.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.7e-108 395.2 276 82.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 4.7e-108 395.2 279 81.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 4.7e-108 395.2 255 87.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 6.1e-108 394.8 255 87.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.1e-108 394.8 255 87.5
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 7.9e-108 394.4 255 87.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.9e-108 394.4 255 88.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 7.9e-108 394.4 255 88.2
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 7.9e-108 394.4 255 87.8
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 7.9e-108 394.4 281 81.5
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.0e-107 394.0 255 87.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.0e-107 394.0 255 87.8
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.0e-107 394.0 255 87.8
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.4e-107 393.7 255 87.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-107 393.7 255 87.5
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.8e-107 393.3 255 87.8
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.8e-107 393.3 255 87.8
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.3e-107 392.9 255 87.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.3e-107 392.9 255 87.5
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 3.0e-107 392.5 255 87.1
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.9e-107 392.1 255 86.7
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.9e-107 392.1 255 87.8
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.9e-107 392.1 255 87.1
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 5.2e-107 391.7 255 87.1
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 6.7e-107 391.3 253 88.5
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 6.7e-107 391.3 255 87.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 6.7e-107 391.3 255 86.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 6.7e-107 391.3 255 86.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.7e-107 391.3 254 85.8
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 8.8e-107 391.0 281 80.1
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 8.8e-107 391.0 282 80.1
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 8.8e-107 391.0 282 80.1
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.5e-106 390.2 255 86.7
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.6e-106 389.4 252 86.5
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.3e-106 389.0 254 87.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 5.7e-106 388.3 255 85.9
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 7.4e-106 387.9 254 86.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 7.4e-106 387.9 255 86.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.3e-105 387.1 281 79.4
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.3e-105 387.1 255 85.9
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.3e-105 387.1 255 86.3
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.7e-105 386.7 256 85.5
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.7e-105 386.7 255 85.5
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 6.3e-105 384.8 254 86.2
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.3e-105 384.8 255 85.1
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 8.2e-105 384.4 279 80.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 8.2e-105 384.4 255 86.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.1e-104 384.0 254 84.3
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.1e-104 384.0 255 85.9
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.8e-104 383.3 255 85.1
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.1e-104 382.5 286 78.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 7.0e-104 381.3 261 83.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.2e-103 380.6 283 79.9
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.6e-103 379.4 255 85.1
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 4.5e-103 378.6 263 83.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.7e-102 376.7 255 83.9
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.9e-101 373.2 256 83.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.2e-101 372.1 279 78.5
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.0e-99 367.5 254 83.5
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.8e-99 366.7 256 81.2
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.0e-99 365.9 299 73.2
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-99 365.2 298 73.2
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 5.2e-99 365.2 281 76.9
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.6e-98 362.8 255 78.8
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.7e-98 361.7 256 81.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.5e-98 361.3 263 75.3
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 7.5e-98 361.3 233 86.7
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.7e-97 360.1 250 83.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 4.8e-97 358.6 265 78.9
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 6.3e-97 358.2 281 75.1
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 8.2e-97 357.8 256 80.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.1e-96 357.5 338 61.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.1e-96 357.5 277 72.6
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.4e-96 357.1 304 67.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.4e-96 356.3 256 79.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 7.0e-96 354.8 281 70.8
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-95 353.2 254 78.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.5e-95 352.4 296 70.6
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.0e-94 350.9 256 79.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.7e-94 350.1 256 78.5
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 5.0e-94 348.6 254 79.1
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-93 346.7 254 78.7
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.6e-92 343.6 236 81.4
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.1e-92 343.2 275 72.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.0e-91 340.9 222 89.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 3.7e-89 332.4 222 87.4
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 5.9e-87 325.1 253 72.3
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-86 324.3 309 67.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-85 319.7 208 86.1
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.4e-82 309.3 218 82.6
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.3e-81 307.4 256 64.8
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 8.3e-81 304.7 256 68.0
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-80 303.1 227 77.1
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-80 303.1 227 77.1
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.2e-79 300.8 262 67.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 8.9e-75 284.6 264 65.2
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 3.4e-74 282.7 254 63.0
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 9.8e-74 281.2 255 68.2
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-72 277.7 255 67.8
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.1e-72 275.8 291 61.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.8e-68 263.1 186 80.1
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 5.0e-62 242.3 269 52.8
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.9e-61 240.4 236 59.3
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.6e-58 229.9 153 77.1
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-57 226.9 270 52.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.9e-57 225.7 180 77.2
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-54 217.6 145 87.6
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.0e-50 203.8 129 86.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.2e-44 184.5 116 82.8
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.8e-43 180.6 288 44.8
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.1e-40 171.4 110 80.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 4.8e-36 156.0 84 92.9
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.2e-32 142.9 78 91.0
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 7.1e-32 142.1 84 83.3
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 4.6e-31 139.4 75 92.0
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 8.1e-28 128.6 80 81.2
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.3e-24 115.2 135 55.6
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.8e-19 100.9 58 82.8
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 3.1e-19 100.1 252 36.1
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-18 97.8 71 88.7
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.5e-18 96.3 123 52.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.0e-17 95.1 52 88.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.0e-17 95.1 52 88.5
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-17 92.8 71 81.7
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.4e-16 91.3 144 45.8
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.5e-16 90.5 149 38.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 5.5e-16 89.4 152 36.8
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.1e-15 87.4 121 48.8
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.3e-14 84.7 146 40.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.3e-14 84.0 130 43.1
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 3.9e-14 83.2 50 78.0
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.1e-13 81.6 89 61.8
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-12 77.4 46 84.8
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 8.2e-12 75.5 157 38.9
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-11 75.1 157 34.4
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-10 69.3 163 33.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.8e-09 66.6 268 31.3
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.5e-09 65.5 121 38.8
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.3e-08 62.0 114 46.5
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 2.7e-07 60.5 46 60.9
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.6e-07 60.1 58 56.9


User provided reference genes

Program Settings