Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.7e-120 434.9 215 100.0
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 9.7e-105 383.6 215 91.6
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.5e-102 374.8 215 88.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 8.0e-83 310.8 216 76.9
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 8.2e-80 300.8 214 70.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.2e-77 292.7 218 67.9
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.0e-77 291.6 214 67.3
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-76 290.4 218 68.8
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.9e-76 289.7 218 68.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 4.2e-76 288.5 218 66.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 3.6e-75 285.4 218 67.4
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 8.0e-75 284.3 218 66.1
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 2.3e-74 282.7 219 66.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.3e-74 282.7 218 65.6
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.3e-74 282.7 218 66.1
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.0e-74 282.3 215 66.0
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 6.8e-74 281.2 219 65.8
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.0e-73 279.6 218 65.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 3.4e-73 278.9 219 64.8
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.4e-73 278.5 218 65.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.7e-73 278.1 215 67.9
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 7.5e-73 277.7 218 67.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 7.5e-73 277.7 218 67.0
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.3e-72 276.9 216 68.1
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.3e-72 276.9 222 66.7
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.2e-72 276.2 215 67.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.2e-72 276.2 218 64.7
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 8.3e-72 274.2 215 64.2
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 8.3e-72 274.2 219 66.2
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-71 273.9 215 64.2
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.1e-71 273.9 217 64.5
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.4e-71 273.5 219 66.2
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.4e-71 272.7 215 63.7
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.1e-71 272.3 215 63.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.1e-71 272.3 215 64.7
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.1e-71 271.9 215 63.7
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.2e-70 270.4 225 64.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.6e-70 270.0 220 63.6
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.6e-70 270.0 215 63.3
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.3e-69 266.9 217 65.0
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.7e-69 266.5 217 62.7
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 3.8e-69 265.4 218 61.5
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 5.0e-69 265.0 221 62.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 8.5e-69 264.2 216 61.6
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-68 263.1 214 59.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.9e-68 263.1 220 61.8
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.2e-68 261.9 218 61.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 4.2e-68 261.9 224 63.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 4.2e-68 261.9 221 60.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.7e-67 259.2 228 63.6
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 8.0e-67 257.7 214 63.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.8e-66 256.5 217 64.1
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.8e-66 254.6 216 61.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 8.8e-66 254.2 219 62.1
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 8.8e-66 254.2 215 61.4
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.5e-65 253.4 217 59.4
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.0e-65 253.1 219 58.9
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.4e-65 252.3 220 58.6
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.4e-65 252.3 220 59.1
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.4e-65 252.3 220 59.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.4e-65 252.3 219 61.2
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 4.4e-65 251.9 214 59.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.3e-64 250.4 217 58.5
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.7e-64 250.0 215 61.9
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.7e-64 250.0 217 58.5
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.9e-64 248.4 217 60.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 6.3e-64 248.1 218 61.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 8.3e-64 247.7 218 60.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.1e-63 247.3 219 59.4
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 9.2e-63 244.2 217 59.9
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 9.2e-63 244.2 214 60.3
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.0e-62 243.0 224 58.9
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.7e-61 240.0 214 59.8
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.9e-61 239.2 219 57.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.9e-61 239.2 217 58.1
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-60 236.5 214 56.5
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.5e-60 236.1 220 58.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.3e-60 235.3 158 74.1
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.3e-60 234.6 221 56.1
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-58 229.9 214 58.9
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.8e-58 229.9 214 57.5
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.0e-58 228.8 217 56.7
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 4.0e-58 228.8 218 57.3
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 5.2e-58 228.4 218 56.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 5.2e-58 228.4 214 57.5
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 6.8e-58 228.0 222 57.2
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 6.8e-58 228.0 216 56.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-57 226.9 216 57.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.5e-57 226.9 216 57.9
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.0e-57 226.5 214 55.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.0e-57 226.5 216 57.9
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.6e-57 226.1 214 55.6
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.6e-57 226.1 214 55.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.4e-57 225.7 214 54.7
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.4e-57 225.7 219 56.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.4e-57 225.3 214 55.1
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 5.7e-57 224.9 245 52.7
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 9.8e-57 224.2 208 56.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 9.8e-57 224.2 214 58.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 9.8e-57 224.2 214 58.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.9e-56 222.6 216 55.1
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 6.4e-56 221.5 222 53.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 8.3e-56 221.1 214 57.5
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.1e-55 220.7 219 56.2
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-55 220.7 216 56.5
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.8e-55 219.9 222 53.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 3.2e-55 219.2 215 55.3
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.1e-55 218.8 182 62.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.1e-55 218.8 215 55.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.1e-55 218.8 143 72.0
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 7.0e-55 218.0 215 55.8
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 7.0e-55 218.0 225 51.1
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 9.2e-55 217.6 222 53.6
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.2e-54 217.2 235 51.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.0e-54 216.5 228 51.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.0e-54 216.5 214 54.7
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.7e-54 216.1 215 55.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.6e-54 215.3 215 53.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-53 213.8 214 53.3
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.3e-53 213.8 218 52.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.0e-53 212.6 218 52.8
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.0e-53 211.8 217 53.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.6e-53 211.5 217 53.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 8.6e-53 211.1 214 52.8
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.3e-52 209.1 200 56.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 7.3e-52 208.0 216 51.9
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 7.3e-52 208.0 180 60.0
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 9.5e-52 207.6 226 52.7
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.8e-51 206.1 217 53.9
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.8e-51 206.1 228 51.8
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 4.7e-51 205.3 210 51.9
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 2.3e-50 203.0 237 49.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.0e-50 202.2 130 71.5
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.5e-49 200.3 189 59.3
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.5e-49 200.3 229 48.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 5.8e-49 198.4 134 67.9
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.3e-48 197.2 214 51.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.3e-48 197.2 188 55.3
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 3.7e-48 195.7 207 50.2
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.7e-48 195.7 222 50.0
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.9e-48 195.3 144 64.6
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-47 193.0 133 66.9
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.4e-47 193.0 152 61.8
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.4e-47 193.0 222 49.1
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 5.4e-47 191.8 127 67.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 5.4e-47 191.8 127 67.7
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 9.2e-47 191.0 214 51.9
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.3e-45 186.4 228 47.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.0e-45 186.0 217 49.3
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 5.6e-44 181.8 222 49.1
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 7.3e-44 181.4 219 46.6
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.1e-43 179.9 141 60.3
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 3.6e-43 179.1 175 55.4
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 8.1e-43 177.9 123 67.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-42 177.2 221 44.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.3e-42 176.4 162 54.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.3e-42 176.4 219 45.2
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.2e-42 175.3 219 44.3
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.2e-41 174.1 217 46.1
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.6e-41 172.9 138 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.9e-40 168.7 227 45.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.4e-39 166.4 218 48.6
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 3.2e-39 166.0 149 55.0
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.6e-38 163.7 101 68.3
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 6.0e-38 161.8 214 43.0
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.0e-37 161.0 138 57.2
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.0e-37 159.5 266 39.5
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 7.3e-36 154.8 218 46.8
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 4.0e-34 149.1 160 53.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-33 146.7 213 46.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.4e-31 138.7 74 86.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 9.2e-31 137.9 227 42.7
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 9.2e-31 137.9 227 42.7
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.3e-28 129.4 215 40.9
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.0e-25 120.2 88 63.6
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-20 104.0 76 65.8
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 9.9e-17 91.3 52 78.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.8e-16 89.4 46 82.6
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.4e-16 88.6 111 46.8


User provided reference genes

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