Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G022950 Citrullus lanatus HOM05D006191 ORTHO05D007660 2.5e-60 235.3 125 100.0
Haze_23211 Corylus avellana HOM05D000001 ORTHO05D000003 4.6e-22 108.2 52 98.1
AUR62037186 Chenopodium quinoa HOM05D006191 ORTHO05D007660 1.9e-20 102.8 158 50.6
Oeu030629.1 Olea europaea HOM05D006191 ORTHO05D007660 5.6e-20 101.3 125 50.4
MELO3C014567.2 Cucumis melo HOM05D006191 ORTHO05D007660 7.3e-20 100.9 125 51.2
CsaV3_6G039080 Cucumis sativus L. HOM05D006191 ORTHO05D007660 7.3e-20 100.9 125 51.2
Sopen11g024870 Solanum pennellii HOM05D006191 ORTHO05D007660 9.5e-20 100.5 125 50.4
PGSC0003DMG400031241 Solanum tuberosum HOM05D006191 ORTHO05D007660 9.5e-20 100.5 125 50.4
MBI13_g01622_MAGBIO Magnolia biondii HOM05D006191 ORTHO05D007660 1.2e-19 100.1 125 50.4
Sed0001199 Sechium edule HOM05D006191 ORTHO05D007660 1.2e-19 100.1 125 50.4
CSS0014439 Camellia sinensis var. sinensis HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
CANSAT54G1797 Cannabis sativa HOM05D006191 ORTHO05D007660 1.6e-19 99.8 49 98.0
Ciclev10017371m.g Citrus clementina HOM05D006191 ORTHO05D007660 1.6e-19 99.8 49 98.0
Duzib106G0217 Durio zibethinus HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
Duzib128G0357 Durio zibethinus HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
Gohir.A10G183900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
Gohir.D10G191200 Gossypium hirsutum HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
Gorai.011G214000 Gossypium raimondii HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
Nn2g14883 Nelumbo nucifera HOM05D006191 ORTHO05D007660 1.6e-19 99.8 49 98.0
Nn7g36644 Nelumbo nucifera HOM05D000965 ORTHO05D000842 1.6e-19 99.8 49 98.0
PSO339G4970 Papaver somniferum HOM05D006191 ORTHO05D007660 1.6e-19 99.8 49 98.0
PSO384G4772 Papaver somniferum HOM05D006191 ORTHO05D007660 1.6e-19 99.8 49 98.0
TAR623G0607 Trochodendron aralioides HOM05D006191 ORTHO05D007660 1.6e-19 99.8 125 50.4
Atru.chr3.2798 Acer truncatum HOM05D006191 ORTHO05D007660 2.1e-19 99.4 49 95.9
Peaxi162Scf00004g04011 Petunia axillaris HOM05D006191 ORTHO05D007660 2.1e-19 99.4 49 95.9
Potri.001G277100 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.1e-19 99.4 49 95.9
Potri.009G071900 Populus trichocarpa HOM05D006191 ORTHO05D007660 2.1e-19 99.4 125 49.6
Sabra09G0054200 Salix brachista HOM05D006191 ORTHO05D007660 2.1e-19 99.4 125 49.6
Thecc.10G162100 Theobroma cacao HOM05D006191 ORTHO05D007660 2.1e-19 99.4 125 49.6
TWI38G0245 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 2.1e-19 99.4 49 95.9
TWI63G0884 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 2.1e-19 99.4 49 95.9
GSVIVG01037255001 Vitis vinifera HOM05D006191 ORTHO05D007660 2.1e-19 99.4 125 49.6
Atru.chr12.1349 Acer truncatum HOM05D006191 ORTHO05D007660 2.8e-19 99.0 125 49.6
CiPaw.14G114100 Carya illinoinensis HOM05D006191 ORTHO05D007660 2.8e-19 99.0 125 49.6
COL.COLO4_04799 Corchorus olitorius HOM05D006191 ORTHO05D007660 2.8e-19 99.0 125 49.6
THA.LOC104819131 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 2.8e-19 99.0 125 49.6
CAN.G484.24 Capsicum annuum HOM05D006191 ORTHO05D007660 3.6e-19 98.6 49 93.9
Dinv05064 Davidia involucrata HOM05D006191 ORTHO05D007660 3.6e-19 98.6 49 93.9
HanXRQChr06g0182571 Helianthus annuus HOM05D006191 ORTHO05D007660 3.6e-19 98.6 49 93.9
Hma1.2p1_0115F.1_g055930 Hydrangea macrophylla HOM05D006191 ORTHO05D007660 3.6e-19 98.6 125 48.8
Lsat_1_v5_gn_2_33900 Lactuca sativa HOM05D006191 ORTHO05D007660 3.6e-19 98.6 49 93.9
Mapoly0046s0044 Marchantia polymorpha HOM05D006191 ORTHO05D007660 3.6e-19 98.6 49 93.9
Solyc12g099705.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 3.6e-19 98.6 49 93.9
Sopen12g034350 Solanum pennellii HOM05D006191 ORTHO05D007660 3.6e-19 98.6 125 48.8
CAN.G1850.1 Capsicum annuum HOM05D006191 ORTHO05D007660 4.7e-19 98.2 49 95.9
Migut.D00650 Erythranthe guttata HOM05D006191 ORTHO05D007660 4.7e-19 98.2 49 91.8
Thhalv10021870m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 4.7e-19 98.2 49 93.9
TPR.G8494 Trifolium pratense HOM05D006191 ORTHO05D007660 4.7e-19 98.2 125 49.6
Eucgr.J01186 Eucalyptus grandis HOM05D006191 ORTHO05D007660 6.2e-19 97.8 49 91.8
Glyma.08G302200 Glycine max HOM05D006191 ORTHO05D007660 6.2e-19 97.8 49 95.9
Gohir.D13G004600 Gossypium hirsutum HOM05D006191 ORTHO05D007660 6.2e-19 97.8 125 49.6
Gorai.013G005000 Gossypium raimondii HOM05D006191 ORTHO05D007660 6.2e-19 97.8 49 95.9
Manes.01G180500 Manihot esculenta HOM05D006191 ORTHO05D007660 6.2e-19 97.8 125 49.6
Nitab4.5_0004018g0100 Nicotiana tabacum HOM05D006191 ORTHO05D007660 6.2e-19 97.8 49 93.9
Oeu001494.1 Olea europaea HOM05D006191 ORTHO05D007660 6.2e-19 97.8 49 93.9
PGR031G0246 Punica granatum HOM05D006191 ORTHO05D007660 6.2e-19 97.8 49 93.9
Aa31LG5G18460 Aethionema arabicum HOM05D006191 ORTHO05D007660 8.0e-19 97.4 49 93.9
Carub.0003s0749 Capsella rubella HOM05D006191 ORTHO05D007660 8.0e-19 97.4 49 93.9
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 8.0e-19 97.4 49 93.9
Thhalv10022475m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 8.0e-19 97.4 49 91.8
QL01p017491 Quercus lobata HOM05D006191 ORTHO05D007660 8.0e-19 97.4 124 49.2
THA.LOC104825593 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 8.0e-19 97.4 125 48.8
Cpa.g.sc3.359 Carica papaya HOM05D006191 ORTHO05D007660 1.1e-18 97.1 125 48.8
CDE02G2705 Ceratophyllum demersum HOM05D006191 ORTHO05D007660 1.1e-18 97.1 49 91.8
DCAR_002114 Daucus carota HOM05D006191 ORTHO05D007660 1.1e-18 97.1 49 91.8
Medtr3g434780 Medicago truncatula HOM05D006191 ORTHO05D007660 1.4e-18 96.7 125 48.8
Sc11g0006400 Simmondsia chinensis HOM05D006191 ORTHO05D007660 1.8e-18 96.3 125 48.8
CARHR082640 Cardamine hirsuta HOM05D006191 ORTHO05D007660 2.3e-18 95.9 49 91.8
Duzib114G0719 Durio zibethinus HOM05D006191 ORTHO05D007660 2.3e-18 95.9 125 48.8
Lalb_Chr07g0183161 Lupinus albus HOM05D006191 ORTHO05D007660 2.3e-18 95.9 49 91.8
AagrBONN_evm.TU.Sc2ySwM_362.136 Anthoceros agrestis HOM05D006191 ORTHO05D007660 3.1e-18 95.5 125 46.4
HPP92_025477 Vanilla planifolia HOM05D006191 ORTHO05D007660 3.1e-18 95.5 49 89.8
Lj6g0026433 Lotus japonicus HOM05D006191 ORTHO05D007660 4.0e-18 95.1 49 91.8
A03p35550 Brassica napus HOM05D006191 ORTHO05D007660 5.2e-18 94.7 46 95.7
C03p43190 Brassica napus HOM05D006191 ORTHO05D007660 5.2e-18 94.7 46 95.7
BolC3t16588H Brassica oleracea HOM05D006191 ORTHO05D007660 5.2e-18 94.7 46 95.7
BraA03t12731Z Brassica rapa HOM05D006191 ORTHO05D007660 5.2e-18 94.7 46 95.7
Potri.003G197801 Populus trichocarpa HOM05D006191 ORTHO05D007660 5.2e-18 94.7 125 48.0
Potri.T125106 Populus trichocarpa HOM05D006191 ORTHO05D007660 5.2e-18 94.7 125 48.0
Sp3g06830 Schrenkiella parvula HOM05D006191 ORTHO05D007660 5.2e-18 94.7 46 95.7
BcaB04g21265 Brassica carinata HOM05D006191 ORTHO05D007660 6.8e-18 94.4 46 95.7
BcaC05g29581 Brassica carinata HOM05D006191 ORTHO05D007660 6.8e-18 94.4 46 95.7
A05p40330 Brassica napus HOM05D006191 ORTHO05D007660 6.8e-18 94.4 46 95.7
EL10Ac2g02816 Beta vulgaris HOM05D006191 ORTHO05D007660 1.2e-17 93.6 49 87.8
C05p59410 Brassica napus HOM05D006191 ORTHO05D007660 1.2e-17 93.6 46 93.5
BolC5t34598H Brassica oleracea HOM05D006191 ORTHO05D007660 1.2e-17 93.6 46 93.5
Cfa010050 Carpinus fangiana HOM05D000477 ORTHO05D000338 1.2e-17 93.6 48 91.7
Sabra16G0171200 Salix brachista HOM05D006191 ORTHO05D007660 1.3e-16 90.1 52 86.5
AT3G07910 Arabidopsis thaliana HOM05D006191 ORTHO05D007660 1.7e-16 89.7 49 87.8
ECA238G0093 Erigeron canadensis HOM05D006191 ORTHO05D007660 2.2e-16 89.4 49 83.7
MD00G1126200 Malus domestica HOM05D006191 ORTHO05D007660 2.9e-16 89.0 48 85.4
MD00G1154200 Malus domestica HOM05D006191 ORTHO05D007660 2.9e-16 89.0 48 85.4
SMO301G0059 Selaginella moellendorffii HOM05D006191 ORTHO05D007660 3.7e-16 88.6 46 82.6
Prupe.4G268400 Prunus persica HOM05D006191 ORTHO05D007660 8.3e-16 87.4 46 84.8
Glyma.18G117700 Glycine max HOM05D006191 ORTHO05D007660 1.1e-15 87.0 45 93.3
Actinidia23986 Actinidia chinensis HOM05D006191 ORTHO05D007660 1.4e-15 86.7 119 47.1
BcaC09g47957 Brassica carinata HOM05D006191 ORTHO05D007660 1.4e-15 86.7 46 87.0
BolC1t05519H Brassica oleracea HOM05D006191 ORTHO05D007660 1.4e-15 86.7 46 87.0
BraA01t04352Z Brassica rapa HOM05D006191 ORTHO05D007660 1.4e-15 86.7 46 87.0
Solyc11g150142.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 1.4e-15 86.7 86 54.7
Pp3c9_12820 Physcomitrium patens HOM05D006191 ORTHO05D007660 1.9e-15 86.3 47 78.7
Cc01_g05600 Coffea canephora HOM05D006191 ORTHO05D007660 9.2e-15 84.0 45 86.7
Gohir.A13G004900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 3.5e-14 82.0 132 44.7
Pp3c15_6032 Physcomitrium patens HOM05D006191 ORTHO05D007660 3.5e-14 82.0 46 76.1
Zm00001eb432230 Zea mays HOM05D006191 ORTHO05D007660 6.0e-14 81.3 42 88.1
RcHm_v2.0_Chr5g0050711 Rosa chinensis HOM05D006191 ORTHO05D007660 1.3e-13 80.1 49 73.5
FvH4_3g28030 Fragaria vesca HOM05D006191 ORTHO05D007660 1.7e-13 79.7 49 71.4
FAN16G3748 Fragaria x ananassa HOM05D006191 ORTHO05D007660 1.7e-13 79.7 49 71.4
Rhsim01G0194500 Rhododendron simsii HOM05D000189 ORTHO05D000474 2.3e-13 79.3 41 95.1
Aqoxy2G00346 Aquilegia oxysepala HOM05D006191 ORTHO05D007660 3.0e-13 79.0 47 70.2
FAN25G1591 Fragaria x ananassa HOM05D006191 ORTHO05D007660 3.9e-13 78.6 49 69.4
Cre01.g010500 Chlamydomonas reinhardtii HOM05D006191 ORTHO05D007660 2.5e-12 75.9 47 70.2
ATR0745G066 Amborella trichopoda HOM05D006191 ORTHO05D007660 3.3e-12 75.5 46 76.1
FAN21G2777 Fragaria x ananassa HOM05D006191 ORTHO05D007660 4.3e-12 75.1 46 69.6
MCO15G227 Micromonas commoda HOM05D006191 ORTHO05D007660 4.3e-12 75.1 47 66.0
Glyma.04G138500 Glycine max HOM05D006191 ORTHO05D007660 5.6e-12 74.7 42 83.3
arahy.Tifrunner.gnm1.ann1.MB5P1Q Arachis hypogaea HOM05D006191 ORTHO05D007660 9.5e-12 73.9 42 83.3
BcaC09g47961 Brassica carinata HOM05D006191 ORTHO05D007660 1.6e-11 73.2 38 89.5
Lalb_Chr04g0264081 Lupinus albus HOM05D006191 ORTHO05D007660 1.6e-11 73.2 42 81.0
Lalb_Chr25g0282111 Lupinus albus HOM05D006191 ORTHO05D007660 1.6e-11 73.2 42 81.0
Phvul.005G027500 Phaseolus vulgaris HOM05D006191 ORTHO05D007660 1.6e-11 73.2 42 81.0
Psat5g217760 Pisum sativum HOM05D006191 ORTHO05D007660 1.6e-11 73.2 42 81.0
arahy.Tifrunner.gnm1.ann1.HDQ2FX Arachis hypogaea HOM05D006191 ORTHO05D007660 2.1e-11 72.8 42 81.0
TPR.G17809 Trifolium pratense HOM05D006191 ORTHO05D007660 2.1e-11 72.8 42 78.6
Lj3g0010990 Lotus japonicus HOM05D006191 ORTHO05D007660 8.1e-11 70.9 42 78.6
Medtr3g017440 Medicago truncatula HOM05D006191 ORTHO05D007660 1.4e-10 70.1 42 76.2
PRCOL_00002293 Prasinoderma coloniale HOM05D006191 ORTHO05D007660 2.3e-10 69.3 46 67.4
Zm00001eb068350 Zea mays HOM05D006191 ORTHO05D007660 3.4e-09 65.5 35 82.9
FAN11G1162 Fragaria x ananassa HOM05D006191 ORTHO05D007660 7.5e-09 64.3 38 73.7
SalBow1G5107 Salvia bowleyana HOM05D006191 ORTHO05D007660 4.6e-06 55.1 45 62.2


User provided reference genes

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