Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 0.0e+00 1193.3 599 100.0
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 0.0e+00 1115.9 599 93.7
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 0.0e+00 1114.8 599 93.7
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.4e-270 935.3 558 84.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.1e-230 803.5 605 68.1
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 9.2e-230 800.4 596 67.8
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.3e-228 795.8 608 66.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.6e-226 789.6 610 66.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.1e-225 785.4 607 65.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.0e-225 785.0 605 66.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.3e-220 770.0 597 64.5
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 3.0e-220 768.8 603 65.0
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 6.6e-220 767.7 618 65.2
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 8.7e-220 767.3 602 65.6
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 4.3e-219 765.0 608 64.3
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 7.1e-214 747.7 597 62.3
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.3e-212 743.4 603 63.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.7e-212 743.0 611 63.3
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 5.1e-212 741.5 608 62.7
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 5.1e-212 741.5 607 63.6
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.9e-211 739.6 602 64.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 5.6e-211 738.0 634 62.0
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.8e-209 733.0 518 70.3
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 9.0e-209 730.7 608 61.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.5e-208 728.4 597 62.3
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.3e-207 726.9 598 62.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.7e-207 726.5 608 61.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.2e-207 726.1 608 61.5
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-207 725.7 609 62.1
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 4.9e-207 724.9 599 60.9
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 4.9e-207 724.9 608 61.5
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.6e-205 719.9 609 61.6
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.1e-205 719.5 603 61.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.3e-204 716.8 606 62.7
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.8e-204 716.5 604 61.6
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.0e-204 715.7 603 61.4
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 5.1e-204 714.9 602 60.6
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.5e-203 712.6 522 68.6
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 6.2e-202 708.0 607 60.5
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 8.1e-202 707.6 604 60.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.1e-201 707.2 600 61.3
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.1e-201 707.2 599 61.4
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-201 706.8 600 61.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.4e-201 706.1 604 59.6
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 5.3e-201 704.9 599 60.9
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.0e-200 703.0 593 60.7
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.8e-200 701.4 605 60.5
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.3e-199 700.3 604 58.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.2e-199 699.5 600 61.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.9e-199 698.4 614 59.6
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 3.2e-198 695.7 599 60.1
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 5.5e-198 694.9 663 56.9
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 2.7e-197 692.6 520 66.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.3e-196 689.5 602 60.1
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 6.7e-196 688.0 611 57.3
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.7e-196 687.6 585 61.7
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 3.3e-195 685.6 595 60.0
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 9.6e-195 684.1 602 60.1
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.1e-194 682.9 588 59.2
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.8e-194 681.8 602 60.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.2e-194 681.0 587 59.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 4.0e-193 678.7 595 57.6
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 4.0e-193 678.7 580 59.8
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.2e-192 677.2 601 58.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.0e-191 674.1 588 58.2
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.2e-191 672.9 601 58.7
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 2.9e-191 672.5 797 48.1
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.4e-190 670.2 601 57.1
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.1e-189 666.4 604 56.5
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.1e-189 666.4 597 58.0
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.7e-189 666.0 599 59.1
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 4.6e-189 665.2 623 55.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 4.6e-189 665.2 601 56.6
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 6.1e-189 664.8 602 57.0
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.8e-188 663.3 603 56.4
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.3e-188 662.9 601 56.4
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.9e-188 662.1 613 55.8
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 5.1e-188 661.8 617 55.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 5.1e-188 661.8 599 57.4
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.5e-187 659.4 600 57.0
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 6.3e-186 654.8 588 57.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 9.0e-185 651.0 598 56.7
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.7e-181 639.4 587 57.6
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.8e-180 636.7 556 59.9
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 3.9e-180 635.6 524 60.3
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 5.1e-180 635.2 610 55.2
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.1e-169 599.4 614 53.9
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.5e-166 590.5 515 58.1
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 8.0e-165 584.7 488 60.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.9e-164 582.4 592 52.2
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.7e-157 559.7 598 50.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.0e-155 553.5 630 49.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.0e-155 553.5 605 49.8
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 9.8e-155 551.2 609 49.3
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-153 547.7 356 75.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 3.6e-149 532.7 469 58.2
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 8.6e-135 485.0 621 44.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 7.8e-120 435.3 574 42.0
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.3e-118 429.5 393 55.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.1e-117 425.2 447 49.4
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 7.6e-115 418.7 544 44.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 9.9e-115 418.3 504 44.6
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 7.1e-113 412.1 558 42.3
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.0e-111 408.3 304 66.1
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 7.8e-104 382.1 339 56.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.3e-82 311.6 214 74.8
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 8.7e-79 298.9 415 42.2
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.4e-76 290.8 216 69.9
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.0e-75 287.7 284 53.2
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 6.7e-71 272.7 299 50.2
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 4.8e-69 266.5 339 41.3
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.4e-68 265.0 364 37.9
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.3e-68 263.1 329 41.6
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 6.9e-68 262.7 178 74.2
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 9.7e-46 189.1 185 53.0
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.5e-41 173.3 123 63.4
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.0e-39 167.2 122 71.3
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.7e-37 161.8 122 66.4
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.3e-29 135.6 109 63.3
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.1e-28 131.0 248 35.5
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 6.6e-26 123.2 372 27.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.8e-24 117.9 98 55.1
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.8e-23 115.2 361 25.8
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-22 111.7 112 51.8
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 2.9e-21 107.8 100 53.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 8.3e-21 106.3 85 62.4
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.7e-19 101.3 70 67.1
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.5e-19 100.9 145 37.2
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.9e-18 97.4 159 34.6
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 2.3e-15 88.2 175 36.6
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 8.9e-15 86.3 94 50.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.2e-14 85.9 123 43.9
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 4.4e-14 84.0 82 53.7
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 9.8e-14 82.8 80 53.8
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 7.0e-12 76.6 58 69.0
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.0e-11 75.1 69 50.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.0e-10 72.8 253 24.5
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-09 69.3 62 48.4
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.9e-09 68.6 138 32.6
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 5.6e-09 67.0 52 55.8


User provided reference genes

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