Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 2.0e-78 295.8 162 100.0
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 6.5e-61 237.7 147 88.4
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 4.6e-59 231.5 162 84.0
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 1.1e-39 167.2 132 71.2
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 1.0e-37 160.6 155 61.9
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 5.0e-37 158.3 130 66.9
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 8.5e-37 157.5 121 71.9
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 1.1e-36 157.1 144 63.2
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.4e-36 156.8 130 66.9
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 4.2e-36 155.2 129 67.4
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 5.5e-36 154.8 135 66.7
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 5.5e-36 154.8 137 65.7
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 2.7e-35 152.5 123 69.9
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 2.7e-35 152.5 137 67.2
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 4.7e-35 151.8 119 68.9
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 6.1e-35 151.4 149 59.1
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 6.1e-35 151.4 152 59.2
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 7.9e-35 151.0 152 57.9
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 7.9e-35 151.0 120 70.0
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 1.4e-34 150.2 154 59.1
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 1.8e-34 149.8 149 61.1
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 1.8e-34 149.8 149 61.1
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 1.8e-34 149.8 118 68.6
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 3.0e-34 149.1 148 60.1
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 3.0e-34 149.1 96 83.3
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 6.7e-34 147.9 128 65.6
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 1.5e-33 146.7 158 60.8
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 2.0e-33 146.4 150 60.0
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 2.6e-33 146.0 142 64.1
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 3.3e-33 145.6 123 69.9
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 4.4e-33 145.2 113 68.1
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 7.4e-33 144.4 154 59.7
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 9.7e-33 144.1 136 61.8
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 1.7e-32 143.3 151 57.6
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 1.7e-32 143.3 132 65.9
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.8e-32 142.5 122 66.4
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 2.8e-32 142.5 127 60.6
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 2.8e-32 142.5 130 61.5
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 3.7e-32 142.1 151 56.3
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 3.7e-32 142.1 124 62.9
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 6.3e-32 141.4 126 61.9
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 6.3e-32 141.4 140 60.7
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 8.2e-32 141.0 109 69.7
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 1.1e-31 140.6 114 69.3
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.1e-31 140.6 123 64.2
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 1.4e-31 140.2 157 56.7
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 2.4e-31 139.4 130 63.8
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 3.1e-31 139.0 120 63.3
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 4.1e-31 138.7 125 64.0
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 5.3e-31 138.3 126 61.1
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 5.3e-31 138.3 121 68.6
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 9.1e-31 137.5 120 63.3
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 9.1e-31 137.5 102 67.6
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 9.1e-31 137.5 117 66.7
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 1.2e-30 137.1 152 56.6
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 1.2e-30 137.1 151 56.3
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.6e-30 136.7 138 60.1
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 1.6e-30 136.7 149 56.4
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 2.0e-30 136.3 117 66.7
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 2.6e-30 136.0 144 53.5
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 3.5e-30 135.6 147 56.5
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 4.5e-30 135.2 152 54.6
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 7.7e-30 134.4 107 62.6
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 7.7e-30 134.4 138 56.5
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 1.0e-29 134.0 150 54.0
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 1.3e-29 133.7 164 54.3
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 2.2e-29 132.9 154 53.9
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 2.9e-29 132.5 151 55.0
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 3.8e-29 132.1 152 53.9
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 3.8e-29 132.1 163 50.3
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 8.5e-29 131.0 104 61.5
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 1.1e-28 130.6 99 70.7
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 1.5e-28 130.2 92 73.9
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 1.9e-28 129.8 109 66.1
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 4.2e-28 128.6 114 64.0
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 9.4e-28 127.5 155 54.8
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 1.2e-27 127.1 144 53.5
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 2.7e-27 125.9 136 51.5
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 6.1e-27 124.8 162 49.4
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 8.0e-27 124.4 151 53.6
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 8.0e-27 124.4 155 49.7
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 1.8e-26 123.2 156 50.0
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 1.8e-26 123.2 156 50.0
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 1.8e-26 123.2 156 50.0
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 3.0e-26 122.5 138 52.9
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 3.0e-26 122.5 157 49.0
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 6.7e-26 121.3 165 48.5
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 8.8e-26 120.9 141 54.6
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 1.1e-25 120.6 144 54.9
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 1.5e-25 120.2 87 70.1
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.0e-25 119.8 105 66.7
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 5.7e-25 118.2 108 56.5
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 7.5e-25 117.9 154 48.1
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 7.5e-25 117.9 145 54.5
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 9.7e-25 117.5 92 63.0
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 1.3e-24 117.1 176 47.2
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 4.8e-24 115.2 153 47.7
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 6.3e-24 114.8 90 65.6
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 8.2e-24 114.4 91 67.0
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 1.4e-23 113.6 154 46.8
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 1.8e-23 113.2 104 61.5
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 5.3e-23 111.7 104 60.6
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 2.7e-22 109.4 166 44.6
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 1.1e-20 104.0 113 52.2
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 2.5e-20 102.8 155 45.2
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 2.7e-19 99.4 155 46.5
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 4.7e-19 98.6 153 44.4
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 6.3e-16 88.2 110 45.5
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 8.3e-16 87.8 110 46.4
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 8.3e-16 87.8 99 54.5
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 2.2e-13 79.7 113 41.6
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 9.5e-12 74.3 58 67.2
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 9.8e-09 64.3 50 66.0
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.7e-08 62.4 55 58.2
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.4e-07 59.7 55 56.4
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.4e-07 59.7 55 56.4
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.4e-07 59.7 55 56.4
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 4.1e-07 58.9 56 53.6


User provided reference genes

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