Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 7.6e-49 196.8 97 100.0
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 1.6e-30 136.0 85 81.2
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 6.0e-30 134.0 71 93.0
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.0e-29 133.3 71 94.4
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 3.9e-29 131.3 71 84.5
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 6.7e-29 130.6 68 89.7
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 8.7e-29 130.2 68 91.2
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 1.5e-28 129.4 71 90.1
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 1.9e-28 129.0 68 89.7
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.5e-28 128.6 71 83.1
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 5.6e-28 127.5 67 89.6
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 7.4e-28 127.1 68 86.8
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 7.4e-28 127.1 68 86.8
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 7.4e-28 127.1 71 81.7
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 7.4e-28 127.1 67 91.0
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 9.6e-28 126.7 72 80.6
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 1.3e-27 126.3 67 91.0
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 1.6e-27 125.9 70 84.3
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 2.1e-27 125.6 71 80.3
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 2.1e-27 125.6 68 83.8
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 2.1e-27 125.6 68 85.3
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.1e-27 125.6 68 85.3
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 2.8e-27 125.2 68 86.8
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 2.8e-27 125.2 68 83.8
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 2.8e-27 125.2 68 86.8
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 3.7e-27 124.8 84 73.8
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 3.7e-27 124.8 67 86.6
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 4.8e-27 124.4 82 74.4
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 6.2e-27 124.0 72 79.2
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 8.1e-27 123.6 68 85.3
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.1e-26 123.2 68 86.8
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.1e-26 123.2 68 86.8
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.1e-26 123.2 68 86.8
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.1e-26 123.2 66 86.4
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.1e-26 123.2 68 83.8
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.1e-26 123.2 68 86.8
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.8e-26 122.5 68 86.8
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.8e-26 122.5 68 86.8
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.1e-26 121.7 68 85.3
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.1e-26 121.7 68 85.3
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.1e-26 121.7 68 85.3
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 4.0e-26 121.3 68 83.8
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 4.0e-26 121.3 70 84.3
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 4.0e-26 121.3 71 81.7
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 4.0e-26 121.3 71 81.7
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 5.3e-26 120.9 66 87.9
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 6.9e-26 120.6 71 81.7
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 6.9e-26 120.6 68 82.4
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 6.9e-26 120.6 68 82.4
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 6.9e-26 120.6 68 82.4
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 6.9e-26 120.6 68 85.3
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 6.9e-26 120.6 68 83.8
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 6.9e-26 120.6 68 83.8
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 9.0e-26 120.2 68 83.8
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 9.0e-26 120.2 68 82.4
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 1.2e-25 119.8 68 82.4
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 1.2e-25 119.8 68 83.8
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 1.2e-25 119.8 71 83.1
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 1.5e-25 119.4 68 83.8
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.5e-25 119.4 68 85.3
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 1.5e-25 119.4 68 83.8
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 2.0e-25 119.0 67 85.1
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 2.0e-25 119.0 66 86.4
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 2.0e-25 119.0 82 70.7
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.0e-25 119.0 71 83.1
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.0e-25 119.0 68 82.4
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 2.0e-25 119.0 68 80.9
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 2.0e-25 119.0 71 83.1
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 2.0e-25 119.0 68 80.9
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 2.0e-25 119.0 71 83.1
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.6e-25 118.6 66 84.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.6e-25 118.6 66 84.8
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.6e-25 118.6 68 83.8
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 2.6e-25 118.6 67 85.1
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 2.6e-25 118.6 68 82.4
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 2.6e-25 118.6 68 79.4
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 3.4e-25 118.2 66 83.3
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 3.4e-25 118.2 68 82.4
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 3.4e-25 118.2 68 82.4
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 3.4e-25 118.2 68 82.4
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.4e-25 118.2 68 80.9
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 3.4e-25 118.2 71 77.5
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 3.4e-25 118.2 71 76.1
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 3.4e-25 118.2 71 76.1
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 82.4
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 4.5e-25 117.9 68 80.9
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 4.5e-25 117.9 67 82.1
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 4.5e-25 117.9 67 79.1
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 7.6e-25 117.1 68 79.4
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 9.9e-25 116.7 68 80.9
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 9.9e-25 116.7 68 82.4
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 9.9e-25 116.7 67 79.1
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 9.9e-25 116.7 76 72.4
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-24 116.3 68 79.4
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.3e-24 116.3 68 83.8
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.7e-24 115.9 79 72.2
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 2.2e-24 115.5 71 83.1
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 2.2e-24 115.5 71 77.5
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 2.9e-24 115.2 68 76.5
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 2.9e-24 115.2 68 79.4
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 3.8e-24 114.8 68 80.9
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.8e-24 114.8 68 82.4
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.8e-24 114.8 71 78.9
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 3.8e-24 114.8 68 77.9
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 3.8e-24 114.8 71 77.5
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 4.9e-24 114.4 68 77.9
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 4.9e-24 114.4 71 74.6
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 4.9e-24 114.4 68 77.9
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.4e-24 114.0 68 75.0
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 6.4e-24 114.0 71 77.5
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 8.4e-24 113.6 71 76.1
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 8.4e-24 113.6 64 79.7
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 8.4e-24 113.6 66 81.8
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 8.4e-24 113.6 68 77.9
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 8.4e-24 113.6 66 84.8
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 8.4e-24 113.6 71 77.5
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 8.4e-24 113.6 68 77.9
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.1e-23 113.2 70 77.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.4e-23 112.8 71 73.2
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.4e-23 112.8 70 70.0
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.4e-23 112.8 71 73.2
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 1.9e-23 112.5 69 76.8
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 3.2e-23 111.7 66 83.3
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.5e-23 110.9 68 79.4
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.5e-23 110.9 68 79.4
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 5.5e-23 110.9 68 79.4
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 7.1e-23 110.5 68 76.5
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 9.3e-23 110.2 68 76.5
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 1.6e-22 109.4 66 77.3
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 2.1e-22 109.0 71 76.1
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 6.0e-22 107.5 68 70.6
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 7.9e-22 107.1 68 72.1
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.3e-21 106.3 68 79.4
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 1.3e-21 106.3 68 70.6
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 2.3e-21 105.5 78 70.5
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.9e-21 104.8 68 70.6
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 3.9e-21 104.8 68 69.1
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 5.1e-21 104.4 55 92.7
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 1.9e-20 102.4 64 76.6
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 2.5e-20 102.1 70 67.1
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 4.3e-20 101.3 62 75.8
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.1e-18 96.7 55 83.6
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 2.4e-18 95.5 62 71.0
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 3.1e-18 95.1 50 90.0
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 4.0e-18 94.7 66 71.2
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 5.3e-18 94.4 52 84.6
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 9.0e-18 93.6 52 82.7
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 1.5e-17 92.8 49 87.8
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 2.0e-17 92.4 51 82.4
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 3.8e-16 88.2 93 54.8
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 5.5e-15 84.3 90 50.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 9.3e-15 83.6 53 73.6
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 2.1e-14 82.4 55 74.5
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.1e-14 82.4 52 69.2
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 3.5e-14 81.6 51 78.4
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 7.9e-14 80.5 54 68.5
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 8.7e-13 77.0 50 76.0
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 4.3e-12 74.7 47 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 7.4e-12 73.9 59 54.2
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 9.7e-12 73.6 51 74.5
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 1.4e-10 69.7 56 55.4
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 2.2e-08 62.4 35 74.3
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 2.9e-08 62.0 58 55.2
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 6.5e-08 60.8 36 77.8
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 6.5e-08 60.8 36 77.8
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 6.5e-08 60.8 36 77.8
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 1.9e-07 59.3 36 75.0
BcaC04g21006 Brassica carinata HOM05D001074 ORTHO05D001188 1.6e-06 56.2 36 72.2
C09p36720 Brassica napus HOM05D001074 ORTHO05D001188 1.6e-06 56.2 36 72.2
BolC9t56503H Brassica oleracea HOM05D001074 ORTHO05D001188 1.6e-06 56.2 36 72.2
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 3.6e-06 55.1 61 45.9


User provided reference genes

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