Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 2.2e-288 995.0 515 100.0
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 7.4e-236 820.5 582 78.0
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 1.2e-230 803.1 557 79.0
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 1.2e-182 643.7 531 67.8
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 1.5e-148 530.4 550 55.3
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 4.9e-147 525.4 545 56.1
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 3.9e-144 515.8 517 56.7
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 2.6e-140 503.1 526 55.1
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 3.8e-139 499.2 543 54.0
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 5.5e-138 495.4 531 54.6
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 6.0e-137 491.9 539 53.8
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 3.9e-136 489.2 538 53.0
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 5.1e-136 488.8 546 53.3
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 4.3e-135 485.7 555 51.4
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 9.6e-135 484.6 564 52.0
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 1.6e-134 483.8 538 53.3
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 3.7e-134 482.6 553 51.4
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 6.2e-134 481.9 538 52.6
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 1.5e-132 477.2 525 52.6
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 7.6e-132 474.9 555 51.2
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 4.9e-131 472.2 540 51.7
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 8.4e-131 471.5 575 50.4
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 1.1e-130 471.1 527 51.6
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 1.4e-130 470.7 457 59.5
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 7.1e-130 468.4 575 50.3
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 7.9e-129 464.9 528 50.4
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 5.1e-128 462.2 544 49.4
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 2.5e-127 459.9 527 50.1
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 2.5e-127 459.9 543 49.9
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 7.4e-127 458.4 525 51.0
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 2.2e-126 456.8 518 50.8
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 2.2e-126 456.8 522 50.0
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 5.9e-124 448.7 522 49.6
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 3.6e-121 439.5 559 51.0
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 3.6e-121 439.5 522 49.8
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 1.4e-120 437.6 547 47.9
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 1.1e-119 434.5 515 48.9
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 6.3e-118 428.7 517 49.5
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 3.4e-116 422.9 452 52.4
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 2.2e-115 420.2 493 50.1
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 2.2e-115 420.2 528 45.5
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 9.4e-114 414.8 531 45.4
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 9.4e-114 414.8 530 47.9
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 1.2e-113 414.5 522 48.1
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 6.1e-113 412.1 470 49.6
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 2.3e-112 410.2 487 48.3
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 3.9e-112 409.5 524 45.0
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 2.6e-111 406.8 583 43.7
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 4.4e-111 406.0 518 45.0
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 5.7e-111 405.6 513 46.8
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 1.3e-110 404.4 589 45.5
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 2.8e-110 403.3 526 43.9
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 3.7e-110 402.9 515 47.2
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 8.2e-110 401.7 519 44.9
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 1.1e-109 401.4 448 49.6
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 1.1e-109 401.4 497 48.3
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 1.1e-109 401.4 497 48.3
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 5.3e-109 399.1 407 52.8
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 1.2e-108 397.9 553 43.8
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 2.6e-108 396.7 511 45.6
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 3.5e-108 396.4 503 49.1
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 4.5e-108 396.0 455 50.8
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 1.0e-107 394.8 441 51.0
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 5.0e-107 392.5 525 44.0
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 1.1e-106 391.3 513 44.2
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 1.1e-106 391.3 510 45.3
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 1.5e-106 391.0 430 50.5
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 3.6e-105 386.3 533 46.3
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 4.7e-105 386.0 514 47.7
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 1.8e-104 384.0 529 45.6
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 1.8e-104 384.0 445 51.2
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 2.3e-104 383.6 529 44.8
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 3.0e-104 383.3 423 53.2
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 5.2e-104 382.5 517 45.5
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 5.7e-103 379.0 517 45.1
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 9.7e-103 378.3 441 48.1
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 2.2e-102 377.1 468 49.6
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 2.8e-102 376.7 455 50.5
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 1.6e-100 370.9 520 44.2
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 1.0e-99 368.2 531 43.3
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 1.7e-99 367.5 432 48.6
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 1.1e-98 364.8 445 49.2
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 9.4e-98 361.7 385 54.3
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 2.1e-97 360.5 445 47.0
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 2.0e-95 354.0 481 44.5
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 2.2e-94 350.5 538 43.7
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 2.8e-94 350.1 372 54.3
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 3.7e-94 349.7 444 48.0
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 7.0e-93 345.5 558 42.5
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 2.1e-89 334.0 452 44.9
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 3.4e-87 326.6 427 48.7
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 1.1e-85 321.6 472 43.4
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 5.4e-85 319.3 451 43.0
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 3.0e-80 303.5 379 47.2
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 3.6e-73 280.0 480 37.9
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 1.8e-72 277.7 469 38.2
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 4.3e-66 256.5 436 40.1
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 1.9e-61 241.1 441 36.7
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 1.3e-59 235.0 346 42.8
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 8.6e-59 232.3 453 36.2
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 1.9e-58 231.1 475 33.1
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 1.6e-57 228.0 338 40.8
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 1.8e-56 224.6 197 58.9
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 1.2e-52 211.8 302 39.1
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 5.1e-51 206.5 278 46.4
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 6.8e-48 196.1 225 52.4
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.1e-42 178.7 157 58.0
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 1.5e-39 168.3 193 48.2
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 3.8e-38 163.7 221 48.4
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 6.6e-35 152.9 241 43.6
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 6.0e-28 129.8 211 37.0
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 7.1e-21 106.3 159 40.3
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 6.3e-17 93.2 519 22.0
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 1.8e-16 91.7 147 42.2
Haze_23483 Corylus avellana HOM05D006347 ORTHO05D007835 3.7e-09 67.4 129 40.3
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 4.8e-09 67.0 123 35.8
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.5e-07 62.0 50 60.0
Haze_23490 Corylus avellana HOM05D006347 ORTHO05D007835 4.5e-07 60.5 108 42.6
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 7.7e-07 59.7 65 53.8
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 3.8e-06 57.4 85 41.2
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 6.5e-06 56.6 50 56.0


User provided reference genes

Program Settings