Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 5.0e-64 247.7 129 100.0
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.8e-59 231.1 130 91.5
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.1e-58 228.0 130 90.0
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 7.7e-57 223.8 126 90.5
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.2e-56 222.2 126 89.7
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.2e-56 222.2 127 89.8
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.9e-56 221.9 127 88.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 5.0e-56 221.1 129 86.8
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.5e-56 220.7 127 86.6
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.5e-56 220.7 127 85.8
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 8.5e-56 220.3 120 92.5
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 8.5e-56 220.3 127 89.0
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 8.5e-56 220.3 127 85.0
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.1e-55 219.9 126 88.9
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.4e-55 219.5 127 85.8
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.4e-55 219.5 127 85.8
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.9e-55 219.2 127 87.4
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 2.5e-55 218.8 127 88.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 4.2e-55 218.0 127 85.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 5.5e-55 217.6 129 83.7
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.2e-55 217.2 127 85.0
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.2e-55 217.2 127 85.0
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.2e-54 216.5 121 90.9
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 85.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 86.6
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 2.1e-54 215.7 125 85.6
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 7.9e-54 213.8 128 83.6
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.9e-54 213.8 129 82.2
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.0e-53 213.4 120 90.8
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.4e-53 213.0 127 85.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.3e-53 212.2 121 84.3
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.3e-53 212.2 129 82.2
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.9e-53 211.5 129 81.4
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 5.2e-53 211.1 124 84.7
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.7e-53 210.7 124 83.9
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.7e-53 210.7 124 83.1
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 8.8e-53 210.3 127 84.3
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-52 209.9 123 83.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.1e-52 209.9 128 82.8
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.5e-52 209.5 128 82.8
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.5e-52 209.5 129 83.7
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.5e-52 209.5 118 88.1
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.0e-52 209.1 118 89.0
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.6e-52 208.8 127 82.7
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.4e-52 208.0 129 80.6
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 9.7e-52 206.8 124 84.7
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 9.7e-52 206.8 121 86.8
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.7e-51 206.1 124 84.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.2e-51 205.7 130 78.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.7e-51 204.9 124 80.6
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 4.8e-51 204.5 126 80.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.8e-51 204.5 118 86.4
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.1e-50 203.4 121 81.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.8e-50 202.6 126 81.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.4e-50 202.2 121 81.0
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.0e-50 200.7 122 80.3
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.0e-50 200.7 122 80.3
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.0e-50 200.7 122 80.3
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 7.0e-50 200.7 128 75.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 9.1e-50 200.3 122 79.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 9.1e-50 200.3 122 79.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.2e-49 199.9 119 81.5
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.6e-49 199.5 116 82.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.6e-49 199.5 126 76.2
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.6e-49 199.5 128 78.9
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-49 199.1 124 80.6
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 3.5e-49 198.4 116 82.8
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 123 79.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 123 78.9
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 5.9e-49 197.6 122 78.7
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 5.9e-49 197.6 123 81.3
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 7.7e-49 197.2 125 80.8
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.0e-48 196.8 125 79.2
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.0e-48 196.8 114 83.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-48 196.4 125 78.4
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.3e-48 196.4 110 90.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.2e-48 195.7 120 78.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.2e-48 195.7 118 80.5
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-48 195.3 125 78.4
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.0e-48 194.5 121 80.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.5e-48 194.1 129 72.1
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.5e-48 194.1 129 72.1
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.5e-48 194.1 126 77.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.1e-47 193.4 117 79.5
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.9e-47 192.6 105 90.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.9e-47 192.6 125 76.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.9e-47 192.6 121 79.3
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 5.5e-47 191.0 120 76.7
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 7.2e-47 190.7 108 88.9
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.2e-47 190.7 120 76.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 7.2e-47 190.7 123 72.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-46 189.9 129 70.5
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.6e-46 189.5 121 76.0
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.6e-46 189.5 117 79.5
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-46 188.3 125 75.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 3.6e-46 188.3 108 86.1
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.7e-46 188.0 117 80.3
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 6.1e-46 187.6 124 77.4
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.0e-45 185.3 120 77.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 5.2e-45 184.5 122 79.5
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 5.2e-45 184.5 117 76.9
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.8e-42 176.0 98 88.8
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.1e-42 174.9 110 80.9
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 5.3e-42 174.5 123 72.4
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 7.0e-42 174.1 98 86.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 9.1e-42 173.7 118 68.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 9.1e-42 173.7 98 88.8
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.0e-41 172.6 105 79.0
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.0e-41 172.6 99 87.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.0e-41 172.6 119 71.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.3e-40 169.9 104 81.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 6.5e-40 167.5 122 69.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.5e-39 165.6 90 87.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.5e-39 165.6 118 71.2
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.6e-38 162.9 118 70.3
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.1e-38 162.5 124 68.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 6.1e-38 161.0 95 82.1
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 8.0e-38 160.6 129 70.5
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.0e-37 160.2 120 68.3
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 8.8e-37 157.1 98 77.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 8.8e-37 157.1 98 77.6
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 9.8e-36 153.7 128 64.1
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.7e-35 152.9 120 65.8
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.8e-35 152.1 104 71.2
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.8e-35 152.1 119 68.1
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.7e-35 151.8 86 87.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-34 149.4 120 65.8
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 5.9e-33 144.4 89 78.7
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.7e-32 142.9 109 67.0
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 5.0e-32 141.4 86 79.1
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 6.5e-32 141.0 93 74.2
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 6.5e-32 141.0 83 81.9
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.6e-30 136.3 109 63.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-30 136.3 102 69.6
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 3.6e-30 135.2 121 52.9
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 5.7e-28 127.9 88 68.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-27 126.7 85 76.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 2.2e-27 125.9 113 53.1
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.7e-27 125.2 113 51.3
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 6.3e-27 124.4 126 57.1
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.3e-27 124.4 117 51.3
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 6.3e-27 124.4 119 56.3
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.4e-26 123.2 113 51.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.4e-26 121.3 123 49.6
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 5.4e-26 121.3 114 55.3
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.4e-26 121.3 113 51.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.2e-25 120.2 118 48.3
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.5e-25 118.6 117 54.7
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.9e-24 115.5 76 84.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 8.6e-24 114.0 109 52.3
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.2e-22 110.2 134 47.0
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.3e-21 105.9 131 45.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.5e-20 103.2 61 83.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.5e-20 103.2 65 73.8
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.0e-09 66.2 75 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 6.0e-09 64.7 35 77.1
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.3e-08 62.8 53 47.2
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.2e-06 57.0 111 35.1
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.2e-06 57.0 111 34.2
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 4.7e-06 55.1 111 31.5
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 6.2e-06 54.7 111 31.5


User provided reference genes

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