Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 2.0e-42 175.3 84 100.0
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 1.1e-35 152.9 87 93.1
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 7.8e-34 146.7 80 93.8
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 2.1e-31 138.7 76 86.8
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 3.0e-25 118.2 78 76.9
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 6.6e-17 90.5 74 62.2
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 1.5e-16 89.4 74 62.2
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 4.3e-16 87.8 69 63.8
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 7.3e-16 87.0 69 62.3
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 9.5e-16 86.7 74 60.8
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 9.5e-16 86.7 74 59.5
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.6e-15 85.9 75 61.3
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 1.6e-15 85.9 74 59.5
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 3.6e-15 84.7 74 59.5
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 3.6e-15 84.7 74 59.5
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 6.2e-15 84.0 79 54.4
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.2e-14 80.9 67 58.2
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 5.2e-14 80.9 76 56.6
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 1.2e-13 79.7 73 57.5
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.2e-13 79.7 73 57.5
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.2e-13 79.7 73 57.5
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 1.2e-13 79.7 79 53.2
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 1.2e-13 79.7 74 56.8
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 1.5e-13 79.3 74 55.4
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.0e-13 79.0 73 57.5
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 2.0e-13 79.0 74 55.4
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 2.0e-13 79.0 72 54.2
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.4e-13 78.2 73 57.5
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 3.4e-13 78.2 73 57.5
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 5.8e-13 77.4 78 51.3
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.3e-12 76.3 75 54.7
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 2.9e-12 75.1 74 51.4
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.4e-11 72.8 72 52.8
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 1.4e-11 72.8 75 53.3
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 1.9e-11 72.4 62 59.7
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 2.4e-11 72.0 72 52.8
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 3.2e-11 71.6 74 51.4
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 4.1e-11 71.2 72 50.0
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.1e-11 71.2 79 50.6
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 4.1e-11 71.2 79 50.6
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 5.4e-11 70.9 79 50.6
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 2.1e-10 68.9 75 50.7
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 4.6e-10 67.8 58 56.9
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.0e-09 66.6 74 54.1
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.7e-09 65.9 72 48.6
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 3.0e-09 65.1 71 49.3
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 8.7e-09 63.5 51 54.9
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 8.7e-09 63.5 73 47.9
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 1.5e-08 62.8 76 51.3
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.9e-08 62.4 65 55.4
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.5e-08 62.0 64 53.1
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 4.3e-08 61.2 68 50.0
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 5.6e-08 60.8 65 52.3
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 5.6e-08 60.8 63 46.0
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 7.3e-08 60.5 69 46.4
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 9.6e-08 60.1 61 50.8
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 1.2e-07 59.7 66 51.5
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.2e-07 59.7 58 44.8
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 1.2e-07 59.7 57 52.6
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 1.6e-07 59.3 85 47.1
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 2.1e-07 58.9 65 52.3
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 2.1e-07 58.9 54 55.6
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 2.1e-07 58.9 66 50.0
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 2.1e-07 58.9 78 42.3
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 2.8e-07 58.5 64 45.3
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 2.8e-07 58.5 75 50.7
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.8e-07 58.5 56 51.8
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 2.8e-07 58.5 66 53.0
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 2.8e-07 58.5 57 50.9
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 3.6e-07 58.2 65 52.3
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 3.6e-07 58.2 65 52.3
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 3.6e-07 58.2 65 52.3
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 4.7e-07 57.8 52 59.6
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 4.7e-07 57.8 61 42.6
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 4.7e-07 57.8 67 50.7
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 8.1e-07 57.0 82 42.7
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 8.1e-07 57.0 63 47.6
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.1e-06 56.6 82 42.7
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 1.8e-06 55.8 81 39.5
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.8e-06 55.8 85 40.0
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.4e-06 55.5 77 42.9
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 2.4e-06 55.5 68 45.6
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 3.1e-06 55.1 62 51.6
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 4.0e-06 54.7 52 50.0
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 4.0e-06 54.7 62 45.2
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 4.0e-06 54.7 85 40.0
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 4.0e-06 54.7 54 50.0
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 4.0e-06 54.7 66 42.4
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 5.2e-06 54.3 56 48.2
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 5.2e-06 54.3 57 49.1
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 9.0e-06 53.5 53 49.1


User provided reference genes

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