Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.0e-228 795.4 406 100.0
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 9.4e-194 680.2 401 87.5
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.1e-178 630.2 400 81.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 4.1e-149 531.9 389 73.8
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 1.0e-118 431.0 399 58.4
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 2.2e-118 429.9 402 59.2
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 4.9e-118 428.7 399 56.9
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.1e-117 427.6 402 58.0
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.9e-117 426.8 402 58.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-116 424.1 395 58.5
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.4e-114 414.8 386 58.3
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.6e-113 413.7 404 57.2
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.8e-113 412.9 382 57.3
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 2.8e-113 412.9 387 56.6
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 4.8e-113 412.1 401 55.4
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 3.1e-112 409.5 386 56.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 5.3e-112 408.7 378 58.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 9.0e-112 407.9 398 56.3
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.0e-111 406.8 378 60.1
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.3e-110 404.1 395 55.4
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 2.2e-110 403.3 395 54.7
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.2e-109 399.1 403 52.6
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.7e-108 396.4 393 54.7
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 4.6e-108 395.6 383 55.4
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.3e-107 393.3 424 52.8
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.3e-107 393.3 392 55.4
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 2.3e-107 393.3 408 52.9
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 3.0e-107 392.9 387 54.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 8.8e-107 391.3 386 54.9
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 3.3e-106 389.4 408 52.5
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 5.7e-106 388.7 402 53.0
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.7e-105 387.1 414 52.4
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 2.4e-104 383.3 385 55.1
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 3.1e-104 382.9 389 52.7
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 4.1e-104 382.5 378 54.2
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.1e-104 381.3 386 53.1
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.0e-103 380.2 384 53.6
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.6e-103 379.8 383 52.5
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.7e-102 377.1 393 53.2
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 6.5e-102 375.2 387 50.6
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 8.5e-102 374.8 389 52.4
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.1e-101 374.4 389 53.0
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 4.2e-101 372.5 393 52.4
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 7.2e-101 371.7 397 53.9
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.1e-100 370.2 391 52.7
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.7e-100 369.8 380 52.9
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.7e-100 369.8 415 48.9
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 7.9e-100 368.2 390 51.0
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 4.4e-98 362.5 375 53.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 1.3e-97 360.9 407 49.1
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.3e-97 360.9 406 49.3
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 3.7e-97 359.4 408 49.8
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 4.8e-97 359.0 392 50.8
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 9.1e-96 354.8 374 52.4
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.5e-95 352.8 359 54.3
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 3.5e-95 352.8 378 51.9
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.5e-95 352.8 379 53.0
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.5e-95 352.8 357 55.2
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 3.5e-95 352.8 389 49.6
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 4.5e-95 352.4 380 51.6
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.0e-94 351.3 301 57.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.3e-94 350.9 403 49.1
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.3e-94 350.9 390 48.7
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.7e-94 350.5 412 50.5
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.7e-94 350.5 377 53.3
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 2.2e-94 350.1 367 51.8
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.4e-93 347.4 391 49.9
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.9e-93 347.1 402 48.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.2e-92 344.4 383 48.8
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 1.6e-92 344.0 392 50.0
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 4.7e-92 342.4 390 49.5
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.7e-92 342.4 407 48.4
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.8e-91 340.5 388 48.2
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 3.0e-91 339.7 390 49.0
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 6.7e-91 338.6 412 48.3
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.5e-90 337.4 317 60.6
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.5e-90 337.4 378 51.3
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.6e-90 336.7 411 44.0
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 2.2e-89 333.6 381 47.8
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 2.8e-89 333.2 389 48.1
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-88 330.9 393 49.1
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 2.6e-87 326.6 401 44.9
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 4.5e-87 325.9 382 46.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.3e-86 324.3 355 53.0
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.7e-86 323.9 384 45.8
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.9e-85 320.5 372 48.4
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.1e-84 317.0 269 58.7
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.3e-83 313.5 401 43.9
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 4.0e-83 312.8 415 45.3
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.2e-82 311.2 355 50.1
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 3.7e-81 306.2 372 43.0
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 8.3e-81 305.1 410 43.2
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.4e-80 304.3 314 55.7
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 5.3e-80 302.4 267 58.4
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 2.0e-79 300.4 468 42.7
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 3.5e-79 299.7 379 45.9
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.3e-78 297.7 402 43.8
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 7.2e-77 292.0 295 51.2
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.2e-76 291.2 371 46.1
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.2e-76 291.2 400 41.8
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 3.0e-75 286.6 380 46.6
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 4.0e-75 286.2 400 40.5
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.2e-74 284.6 303 46.5
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 4.8e-73 279.3 241 55.6
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 7.0e-72 275.4 271 50.9
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 2.3e-70 270.4 394 43.9
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.5e-69 267.7 380 41.3
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 6.8e-67 258.8 395 38.5
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-66 257.7 309 44.7
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.5e-66 257.7 363 40.8
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.3e-65 254.6 378 39.9
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 6.3e-65 252.3 282 45.7
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 3.5e-63 246.5 364 40.1
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.0e-62 245.0 371 39.9
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 2.3e-62 243.8 195 59.0
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 3.3e-61 240.0 289 42.9
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.0e-59 235.0 290 50.0
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.5e-53 214.5 178 56.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 1.8e-51 207.6 178 53.4
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 6.8e-51 205.7 257 51.0
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.8e-43 181.0 179 47.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 4.6e-39 166.4 221 49.8
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 3.3e-37 160.2 138 52.2
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 5.2e-35 152.9 248 43.5
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.0e-34 151.0 232 38.8
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 8.1e-28 129.0 118 55.9
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.8e-27 127.9 90 58.9
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 9.0e-27 125.6 98 54.1
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.9e-25 120.6 90 57.8
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 1.7e-22 111.3 151 52.3
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.5e-21 108.2 113 44.2
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.5e-21 107.5 101 60.4
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 4.8e-20 103.2 122 42.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.1e-19 100.5 108 43.5
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.3e-19 99.8 110 46.4
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 6.9e-19 99.4 108 45.4
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.4e-17 92.8 97 48.5
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 8.4e-17 92.4 76 59.2
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 7.9e-15 85.9 86 40.7
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.3e-06 57.8 110 44.5
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.3e-06 57.8 117 47.0
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 6.7e-06 56.2 40 62.5


User provided reference genes

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