Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 1.0e-102 376.7 189 100.0
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 2.3e-62 242.7 138 87.7
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 2.7e-50 202.6 134 68.7
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 2.3e-49 199.5 134 70.9
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.1e-49 198.4 134 67.2
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 4.3e-48 195.3 134 66.4
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 5.6e-48 194.9 135 68.9
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 8.1e-47 191.0 136 69.1
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 1.8e-46 189.9 137 65.7
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 2.4e-46 189.5 135 67.4
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 2.4e-46 189.5 134 65.7
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 4.0e-46 188.7 134 66.4
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 6.8e-46 188.0 134 67.2
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 8.9e-46 187.6 136 69.1
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.0e-45 186.4 139 62.6
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 3.4e-45 185.7 128 67.2
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 4.4e-45 185.3 139 63.3
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 9.9e-45 184.1 135 64.4
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.9e-44 182.6 138 67.4
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.9e-44 182.6 139 61.9
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 2.9e-44 182.6 140 61.4
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 4.9e-44 181.8 135 65.2
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 8.4e-44 181.0 141 60.3
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 1.1e-43 180.6 134 66.4
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.4e-43 180.3 137 64.2
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 1.4e-43 180.3 138 63.0
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 2.4e-43 179.5 141 59.6
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 2.4e-43 179.5 136 61.8
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 4.2e-43 178.7 133 63.2
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 4.2e-43 178.7 141 58.2
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.2e-43 178.7 141 58.9
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 7.1e-43 177.9 133 62.4
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 9.2e-43 177.6 136 65.4
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 1.2e-42 177.2 141 58.9
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 1.2e-42 177.2 133 59.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 2.1e-42 176.4 151 56.3
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 3.5e-42 175.6 130 63.8
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 4.6e-42 175.3 137 59.1
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 6.0e-42 174.9 139 58.3
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 6.0e-42 174.9 137 60.6
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 6.0e-42 174.9 133 59.4
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 7.8e-42 174.5 137 62.8
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 1.0e-41 174.1 139 58.3
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.3e-41 173.7 135 59.3
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.3e-41 173.7 139 57.6
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.3e-41 173.7 130 63.1
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 3.0e-41 172.6 144 59.0
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 3.9e-41 172.2 133 61.7
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 3.9e-41 172.2 140 58.6
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 5.1e-41 171.8 141 56.0
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 5.1e-41 171.8 141 57.4
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 6.6e-41 171.4 139 56.8
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 8.7e-41 171.0 139 56.1
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 8.7e-41 171.0 136 59.6
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 1.5e-40 170.2 139 56.8
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 3.3e-40 169.1 133 60.9
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.3e-40 168.7 136 61.8
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 4.3e-40 168.7 132 60.6
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 4.3e-40 168.7 132 61.4
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 1.6e-39 166.8 141 57.4
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 2.1e-39 166.4 136 55.9
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 2.8e-39 166.0 132 59.8
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 3.6e-39 165.6 144 56.9
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.7e-39 165.2 137 58.4
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 6.2e-39 164.9 138 57.2
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 8.1e-39 164.5 141 54.6
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.4e-38 163.7 136 57.4
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.4e-38 163.7 133 57.1
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.8e-38 163.3 136 58.8
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 3.1e-38 162.5 139 56.8
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.0e-38 162.2 139 55.4
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 4.0e-38 162.2 137 57.7
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 6.9e-38 161.4 150 52.7
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 9.0e-38 161.0 139 53.2
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.2e-37 160.6 135 57.0
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 1.2e-37 160.6 144 56.9
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 2.0e-37 159.8 135 60.0
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 2.6e-37 159.5 136 57.4
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 3.4e-37 159.1 139 52.5
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 3.4e-37 159.1 140 53.6
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 5.8e-37 158.3 132 55.3
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 1.3e-36 157.1 124 57.3
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 3.8e-36 155.6 141 53.9
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 4.9e-36 155.2 142 53.5
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 6.4e-36 154.8 136 56.6
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 8.4e-36 154.5 143 54.5
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 9.3e-35 151.0 139 50.4
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 9.3e-35 151.0 137 51.8
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.2e-34 150.6 125 60.0
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.6e-34 150.2 141 55.3
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 2.1e-34 149.8 128 53.1
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 2.1e-34 149.8 133 51.1
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 2.7e-34 149.4 101 68.3
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 3.5e-34 149.1 138 50.7
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 6.0e-34 148.3 102 68.6
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.3e-33 147.1 128 53.1
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 1.7e-33 146.7 143 51.0
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 3.0e-33 146.0 141 49.6
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 6.6e-33 144.8 129 51.2
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 2.5e-32 142.9 112 61.6
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 2.5e-32 142.9 149 48.3
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 2.1e-31 139.8 80 86.2
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 4.8e-31 138.7 146 50.7
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 4.8e-31 138.7 117 56.4
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.1e-30 137.5 133 51.9
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 1.8e-30 136.7 138 58.0
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 2.0e-29 133.3 140 45.7
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 2.9e-28 129.4 119 51.3
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 4.9e-28 128.6 137 46.7
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.4e-27 126.3 102 53.9
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.1e-26 123.2 137 48.9
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 6.0e-26 121.7 120 45.8
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 7.9e-26 121.3 142 44.4
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 1.5e-24 117.1 128 47.7
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.9e-24 116.7 142 44.4
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 5.6e-24 115.2 118 51.7
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 1.7e-20 103.6 121 41.3
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 2.9e-20 102.8 120 42.5
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 6.4e-20 101.7 75 62.7
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 8.4e-20 101.3 104 50.0
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 7.9e-18 94.7 138 37.7
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.5e-16 90.5 116 41.4
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 6.5e-12 75.1 76 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 8.4e-12 74.7 134 35.1
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 1.4e-11 73.9 87 41.4
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 7.1e-11 71.6 76 44.7
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 2.7e-10 69.7 65 47.7
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 6.1e-10 68.6 134 27.6
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.3e-09 67.4 64 48.4
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 1.6e-07 60.5 41 58.5


User provided reference genes

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