Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 5.0e-274 947.2 488 100.0
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 7.7e-243 843.6 488 89.3
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 1.2e-238 829.7 501 87.0
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 8.3e-229 797.0 486 82.1
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 4.5e-166 588.6 486 60.9
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.5e-158 563.5 488 58.8
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 3.8e-157 558.9 486 60.1
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 5.1e-154 548.5 482 60.8
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 8.8e-154 547.7 498 58.0
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 5.7e-153 545.0 462 58.9
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 1.3e-152 543.9 513 58.3
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 2.2e-152 543.1 479 57.2
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 4.8e-152 542.0 453 58.3
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 1.8e-151 540.0 476 57.1
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 2.0e-150 536.6 481 57.6
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 4.5e-150 535.4 461 57.5
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 1.0e-149 534.3 481 57.0
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.3e-149 533.9 456 59.0
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 4.2e-148 528.9 481 57.2
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 7.2e-148 528.1 448 60.0
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 9.7e-145 517.7 451 57.4
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 1.7e-144 516.9 467 57.6
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.8e-144 516.2 489 53.8
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 1.8e-143 513.5 448 56.7
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.4e-143 513.1 492 52.6
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 7.0e-143 511.5 451 56.8
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 3.5e-142 509.2 412 61.9
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 4.5e-142 508.8 448 58.3
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 5.9e-142 508.4 485 55.1
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.7e-141 506.9 486 55.1
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 6.5e-141 505.0 461 57.7
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 8.5e-141 504.6 462 54.8
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 2.5e-140 503.1 466 56.2
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 5.5e-140 501.9 454 57.3
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 9.4e-140 501.1 481 54.1
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 9.4e-140 501.1 473 54.5
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.6e-139 500.4 457 57.1
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 2.1e-139 500.0 450 55.8
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 2.7e-139 499.6 477 53.9
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 1.4e-138 497.3 469 53.7
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 1.8e-138 496.9 465 54.2
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 3.0e-138 496.1 425 58.8
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 3.0e-138 496.1 483 50.9
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 3.0e-138 496.1 489 53.0
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 5.2e-138 495.4 440 55.0
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 8.8e-138 494.6 458 54.1
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 2.0e-137 493.4 464 54.7
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.6e-137 493.0 455 54.3
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 3.4e-137 492.7 479 54.1
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 1.7e-136 490.3 472 54.0
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 1.7e-136 490.3 481 53.0
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.8e-136 489.6 493 51.1
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 8.3e-136 488.0 476 52.5
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 1.1e-135 487.6 460 53.9
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.4e-135 487.3 482 52.5
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 1.4e-135 487.3 464 55.0
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.8e-135 486.9 470 52.6
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 3.1e-135 486.1 470 52.6
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 4.1e-135 485.7 483 52.2
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.6e-134 483.8 465 54.0
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 1.6e-134 483.8 475 52.0
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 1.6e-134 483.8 481 52.2
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 2.0e-134 483.4 472 53.4
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 3.5e-134 482.6 463 53.3
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 1.7e-133 480.3 472 53.2
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 5.0e-133 478.8 472 53.8
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 6.5e-133 478.4 477 52.8
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 8.5e-133 478.0 485 49.7
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 7.2e-132 474.9 428 54.2
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 7.2e-132 474.9 449 53.0
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 9.5e-132 474.6 482 51.7
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 1.6e-131 473.8 463 50.8
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 2.1e-131 473.4 493 49.1
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 3.6e-131 472.6 449 52.6
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 3.6e-131 472.6 470 52.6
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 1.4e-130 470.7 471 52.4
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 5.2e-130 468.8 463 50.5
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 8.8e-130 468.0 447 51.5
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 2.0e-129 466.8 445 53.0
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 7.5e-129 464.9 458 53.1
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 9.8e-129 464.5 438 53.9
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 9.8e-129 464.5 456 53.7
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 1.3e-128 464.2 438 53.4
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 1.3e-128 464.2 489 50.7
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 1.7e-128 463.8 454 52.4
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 1.7e-128 463.8 469 51.0
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 2.2e-128 463.4 453 53.0
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 2.8e-128 463.0 454 52.2
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 2.8e-128 463.0 471 48.0
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 4.9e-128 462.2 436 54.1
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 4.9e-128 462.2 493 51.1
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 4.9e-128 462.2 451 52.5
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 8.3e-128 461.5 438 53.2
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 1.1e-127 461.1 438 53.2
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 1.1e-127 461.1 403 58.6
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.8e-127 460.3 488 49.2
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 8.6e-125 451.4 463 49.7
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 4.3e-124 449.1 462 50.9
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 3.6e-123 446.0 454 50.9
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.0e-122 444.5 449 50.1
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.0e-122 444.5 432 51.4
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 4.0e-122 442.6 483 48.2
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 5.2e-122 442.2 450 50.2
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 7.5e-121 438.3 471 50.1
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 9.8e-121 438.0 486 46.3
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 1.6e-118 430.6 463 45.8
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 2.7e-118 429.9 488 48.2
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 7.3e-116 421.8 438 48.6
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 7.3e-116 421.8 484 47.3
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 6.2e-115 418.7 361 58.2
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.5e-113 414.1 389 51.2
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 7.5e-113 411.8 458 46.9
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 9.2e-111 404.8 461 46.4
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 3.0e-109 399.8 486 43.4
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 5.0e-109 399.1 314 59.6
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 5.0e-109 399.1 478 43.9
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 8.6e-109 398.3 475 43.6
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 2.5e-108 396.7 404 48.3
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 2.8e-107 393.3 476 42.9
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 3.6e-107 392.9 438 46.3
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 3.1e-106 389.8 484 41.5
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 5.2e-106 389.0 485 42.9
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 7.5e-105 385.2 390 49.2
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 9.8e-105 384.8 404 48.0
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.3e-104 384.4 485 42.7
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 2.2e-104 383.6 471 42.0
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.9e-104 383.3 313 59.1
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 3.2e-103 379.8 372 51.6
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 9.2e-103 378.3 372 49.5
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 3.0e-101 373.2 484 40.7
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 1.9e-100 370.5 369 50.7
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 2.8e-99 366.7 444 42.3
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 6.0e-94 349.0 435 42.8
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 7.8e-86 322.0 369 45.0
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 1.7e-85 320.9 487 38.8
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.5e-84 317.0 363 44.1
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 6.7e-77 292.4 431 39.0
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 4.5e-73 279.6 376 40.2
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.7e-72 277.7 349 42.4
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 1.3e-69 268.1 268 53.0
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.0e-69 266.9 237 55.3
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.9e-68 264.2 304 44.4
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 2.2e-64 250.8 473 33.0
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 1.0e-61 241.9 300 40.0
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 2.5e-47 194.1 215 43.7
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.9e-45 186.8 151 58.3
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 4.4e-44 183.3 374 30.5
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.0e-37 162.2 192 44.8
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 1.4e-34 151.8 403 30.0
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 5.9e-33 146.4 309 32.7
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 7.7e-33 146.0 162 43.8
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 2.8e-27 127.5 107 56.1
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 1.1e-26 125.6 297 31.0
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 4.5e-25 120.2 150 46.0
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 5.7e-20 103.2 93 52.7
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 5.7e-20 103.2 82 61.0
Mapoly0091s0075 Marchantia polymorpha HOM05D004273 ORTHO05D031172 3.7e-11 73.9 170 30.6
MCO07G371 Micromonas commoda HOM05D004273 ORTHO05D005041 5.9e-09 66.6 208 24.0
Potri.007G025900 Populus trichocarpa HOM05D001180 ORTHO05D001055 5.9e-09 66.6 207 27.1
Sabra07G0022800 Salix brachista HOM05D001180 ORTHO05D001055 7.8e-09 66.2 205 25.9
Potri.007G025800 Populus trichocarpa HOM05D001180 ORTHO05D001055 1.0e-08 65.9 207 25.6
CiPaw.09G052900 Carya illinoinensis HOM05D001180 ORTHO05D001055 2.3e-08 64.7 214 25.2
HPP92_003105 Vanilla planifolia HOM05D000394 ORTHO05D000299 5.0e-08 63.5 206 27.2
C01p02470 Brassica napus HOM05D001180 ORTHO05D001055 1.9e-07 61.6 216 25.5
AL7G14400 Arabidopsis lyrata HOM05D001180 ORTHO05D001055 3.3e-07 60.8 224 25.4
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 3.3e-07 60.8 64 50.0
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 3.3e-07 60.8 41 68.3
Migut.D01177 Erythranthe guttata HOM05D001471 ORTHO05D001325 7.3e-07 59.7 225 25.8
BcaC01g00455 Brassica carinata HOM05D001180 ORTHO05D001055 9.5e-07 59.3 209 24.9
C03p80020 Brassica napus HOM05D001180 ORTHO05D001055 9.5e-07 59.3 209 24.9
Nn1g04996 Nelumbo nucifera HOM05D001180 ORTHO05D001055 1.2e-06 58.9 204 26.0
BcaB06g28280 Brassica carinata HOM05D004273 ORTHO05D005041 1.6e-06 58.5 43 60.5
CARHR022530 Cardamine hirsuta HOM05D001180 ORTHO05D001055 1.6e-06 58.5 211 22.7
Cc04_g05800 Coffea canephora HOM05D001471 ORTHO05D001325 2.1e-06 58.2 232 23.7
Potri.005G123200 Populus trichocarpa HOM05D001180 ORTHO05D001055 2.1e-06 58.2 205 24.9
Hma1.2p1_0452F.1_g155955 Hydrangea macrophylla HOM05D001471 ORTHO05D001325 2.8e-06 57.8 233 22.3
TAR628G1045 Trochodendron aralioides HOM05D001180 ORTHO05D001055 2.8e-06 57.8 219 25.6
Sabra05G0101300 Salix brachista HOM05D001180 ORTHO05D001055 3.6e-06 57.4 220 25.0
Dinv23232 Davidia involucrata HOM05D001471 ORTHO05D001325 4.7e-06 57.0 228 21.5
Oeu055607.1 Olea europaea HOM05D000394 ORTHO05D000299 4.7e-06 57.0 214 24.8
Eucgr.F01871 Eucalyptus grandis HOM05D000394 ORTHO05D000299 6.1e-06 56.6 232 25.4
FAN08G3067 Fragaria x ananassa HOM05D001180 ORTHO05D001055 6.1e-06 56.6 248 24.6
TPR.G31687 Trifolium pratense HOM05D001180 ORTHO05D001055 8.0e-06 56.2 191 23.6


User provided reference genes

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