Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 2.4e-75 285.4 143 100.0
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.6e-66 255.4 129 97.7
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.4e-66 255.0 129 96.9
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.2e-63 246.5 129 92.2
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 9.4e-56 220.3 129 79.1
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 2.1e-55 219.2 129 79.1
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.6e-55 218.4 129 78.3
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.6e-55 218.4 129 79.8
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.7e-55 218.0 129 79.1
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 6.1e-55 217.6 128 80.5
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-54 216.9 129 79.1
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-54 216.9 129 79.1
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-54 216.9 129 79.1
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.4e-54 216.5 125 82.4
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.4e-54 216.5 125 82.4
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.4e-54 216.5 125 82.4
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 2.3e-54 215.7 127 81.9
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.3e-54 215.7 129 79.8
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.0e-54 214.9 130 78.5
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 4.0e-54 214.9 132 79.5
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 8.8e-54 213.8 128 78.9
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.2e-53 213.4 127 80.3
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.2e-53 213.4 131 78.6
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 1.2e-53 213.4 129 79.1
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.5e-53 213.0 120 82.5
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 2.0e-53 212.6 133 76.7
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 3.3e-53 211.8 129 79.1
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 3.3e-53 211.8 129 76.0
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 3.3e-53 211.8 126 82.5
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.4e-53 211.5 129 79.8
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 5.7e-53 211.1 129 78.3
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.7e-53 211.1 126 78.6
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 7.5e-53 210.7 127 76.4
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 9.7e-53 210.3 129 77.5
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 9.7e-53 210.3 126 78.6
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 9.7e-53 210.3 126 78.6
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-52 209.9 124 82.3
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.3e-52 209.9 133 77.4
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 1.3e-52 209.9 120 80.8
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.7e-52 209.5 127 79.5
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.7e-52 209.5 130 77.7
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.7e-52 209.5 119 84.0
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.7e-52 209.5 119 84.0
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 1.7e-52 209.5 119 81.5
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.2e-52 209.1 127 78.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 2.2e-52 209.1 114 86.0
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.8e-52 208.8 131 77.9
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.8e-52 208.8 139 74.8
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.8e-52 208.8 129 79.1
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.7e-52 208.4 119 83.2
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 3.7e-52 208.4 127 77.2
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.8e-52 208.0 119 82.4
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 4.8e-52 208.0 129 79.1
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 6.3e-52 207.6 129 78.3
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 8.2e-52 207.2 129 76.7
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.1e-51 206.8 129 76.0
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.1e-51 206.8 117 80.3
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.4e-51 206.5 120 80.0
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.4e-51 206.5 121 79.3
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.8e-51 206.1 131 76.3
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.8e-51 206.1 126 78.6
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 2.4e-51 205.7 129 77.5
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 2.4e-51 205.7 127 75.6
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 2.4e-51 205.7 131 77.1
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 2.4e-51 205.7 129 77.5
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 2.4e-51 205.7 129 76.7
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.1e-51 205.3 129 76.7
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.1e-51 205.3 126 77.8
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.1e-51 205.3 118 82.2
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 4.1e-51 204.9 129 76.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 7.0e-51 204.1 120 80.0
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.2e-50 203.4 126 73.8
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.6e-50 203.0 129 73.6
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.6e-50 203.0 129 76.0
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 2.7e-50 202.2 130 73.1
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.7e-50 202.2 129 75.2
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.5e-50 201.8 131 74.0
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.5e-50 201.4 129 74.4
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 5.9e-50 201.1 116 78.4
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.7e-50 200.7 129 76.0
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.0e-49 200.3 120 75.8
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.3e-49 199.9 123 74.8
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 2.2e-49 199.1 121 75.2
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.2e-49 199.1 129 73.6
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.2e-49 199.1 126 72.2
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.2e-49 199.1 121 78.5
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.9e-49 198.7 117 78.6
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.9e-49 198.7 129 75.2
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.9e-49 198.7 114 80.7
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 3.8e-49 198.4 126 76.2
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 3.8e-49 198.4 127 75.6
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.8e-49 198.4 129 76.0
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.1e-48 196.8 121 76.0
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.1e-48 196.8 123 72.4
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.9e-48 196.1 117 77.8
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 3.2e-48 195.3 124 75.0
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.2e-48 195.3 126 73.0
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.2e-48 194.9 126 73.0
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.2e-48 194.9 129 72.9
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 5.5e-48 194.5 121 75.2
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 7.2e-48 194.1 117 80.3
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 9.4e-48 193.7 132 70.5
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.6e-47 193.0 137 70.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.6e-47 193.0 131 70.2
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 2.1e-47 192.6 131 70.2
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 3.6e-47 191.8 130 73.1
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 4.7e-47 191.4 130 72.3
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 4.7e-47 191.4 131 71.8
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 6.1e-47 191.0 131 67.9
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 6.1e-47 191.0 127 72.4
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 8.0e-47 190.7 127 72.4
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 8.0e-47 190.7 121 73.6
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 8.0e-47 190.7 114 78.1
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.0e-46 190.3 137 71.5
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.0e-46 190.3 131 68.7
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.0e-46 190.3 126 73.0
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.4e-46 189.9 127 71.7
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.4e-46 189.9 127 71.7
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.4e-46 189.9 127 71.7
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.4e-46 189.9 126 73.0
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.3e-46 189.1 119 73.9
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.3e-46 189.1 125 72.0
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 5.2e-46 188.0 130 70.8
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 5.2e-46 188.0 130 70.0
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 5.2e-46 188.0 130 70.0
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 5.2e-46 188.0 131 67.9
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 6.8e-46 187.6 130 70.0
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 6.8e-46 187.6 118 73.7
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 1.5e-45 186.4 119 73.1
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-45 186.4 131 67.9
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.0e-45 186.0 133 65.4
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 5.7e-45 184.5 107 78.5
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 7.5e-45 184.1 112 75.0
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.8e-43 179.5 118 66.9
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.8e-43 179.5 118 71.2
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 2.4e-43 179.1 119 70.6
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.4e-43 179.1 112 75.9
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 9.1e-43 177.2 104 77.9
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 3.5e-42 175.3 118 65.3
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 6.5e-41 171.0 126 67.5
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.9e-40 169.5 133 59.4
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 3.3e-40 168.7 121 67.8
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.2e-39 166.8 126 64.3
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 2.8e-39 165.6 118 66.1
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.8e-38 162.9 119 62.2
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 2.3e-38 162.5 125 64.0
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 3.4e-37 158.7 115 67.0
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.1e-35 152.1 91 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 2.0e-34 149.4 104 66.3
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.8e-31 139.0 116 56.9
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 1.3e-28 130.2 78 76.9
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 2.0e-26 122.9 76 75.0
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 4.6e-26 121.7 85 72.9
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.4e-22 110.2 75 69.3
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.8e-22 107.8 63 77.8
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.7e-20 102.1 75 61.3
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.4e-20 101.3 79 58.2
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 1.9e-19 99.8 56 83.9
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.4e-19 98.2 60 80.0
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 7.0e-19 97.8 74 60.8
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 4.9e-12 75.1 50 68.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 7.1e-11 71.2 95 34.7
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 6.0e-10 68.2 45 66.7
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 5.2e-06 55.1 42 61.9


User provided reference genes

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