Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 8.0e-207 723.8 438 100.0
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 7.8e-186 654.1 438 85.2
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.0e-182 641.7 436 90.4
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.0e-181 639.4 427 91.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.0e-181 639.4 427 91.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.8e-145 520.0 437 69.1
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 4.3e-144 515.4 438 68.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 7.4e-144 514.6 438 69.2
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.3e-142 508.4 439 68.6
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 4.5e-141 505.4 451 65.9
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-139 500.7 438 67.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-139 499.6 438 67.6
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.6e-138 496.9 437 67.0
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.6e-138 495.7 438 66.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.6e-138 495.4 445 66.5
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.6e-138 495.4 445 66.5
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.4e-137 493.8 451 65.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.8e-137 493.4 438 66.7
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.3e-137 493.0 438 67.1
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.3e-137 493.0 437 66.6
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.0e-137 492.7 429 68.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 3.9e-137 492.3 444 64.9
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.4e-134 483.0 438 64.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 9.1e-134 481.1 451 65.0
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 9.1e-134 481.1 467 62.1
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 7.7e-133 478.0 448 64.5
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.3e-132 477.2 449 63.7
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.9e-132 476.1 438 66.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.9e-131 473.4 448 62.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.2e-131 472.6 446 63.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.2e-131 472.6 449 63.5
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 4.2e-131 472.2 448 62.3
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 5.5e-131 471.9 438 63.0
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.2e-130 470.7 447 64.0
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 2.7e-130 469.5 440 63.6
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.3e-129 466.5 456 60.5
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.9e-129 465.7 440 63.0
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.9e-129 465.7 449 62.8
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.1e-128 464.2 436 63.3
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.0e-128 463.4 449 63.3
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 5.7e-128 461.8 438 62.1
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.3e-127 460.7 439 62.2
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 4.8e-127 458.8 450 61.6
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 6.3e-127 458.4 421 65.8
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 6.3e-127 458.4 440 63.4
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 8.2e-127 458.0 438 63.5
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 8.2e-127 458.0 439 62.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.1e-126 457.6 435 62.5
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.8e-126 456.8 414 65.7
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.1e-126 455.7 454 61.0
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 9.1e-126 454.5 449 61.5
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 9.1e-126 454.5 450 62.0
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.2e-125 454.1 451 62.3
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 7.7e-125 451.4 448 59.4
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.0e-124 451.1 440 61.6
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.3e-124 450.7 450 61.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.9e-124 449.5 440 60.9
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.8e-124 449.1 446 60.1
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.8e-124 449.1 456 60.7
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.0e-124 448.7 447 59.7
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.5e-124 448.4 443 61.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 6.5e-124 448.4 443 60.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 4.2e-123 445.7 437 62.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 7.2e-123 444.9 448 61.6
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 7.2e-123 444.9 448 59.4
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.2e-122 444.1 442 60.0
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-121 441.0 447 60.2
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.4e-121 440.7 435 62.1
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.8e-121 440.3 436 61.5
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.3e-121 439.9 453 60.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 3.9e-121 439.1 457 59.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 5.2e-121 438.7 434 61.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 5.2e-121 438.7 443 60.7
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 8.8e-121 438.0 446 59.0
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.5e-120 437.2 436 63.8
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.5e-120 437.2 444 60.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.0e-120 436.8 446 58.1
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 7.4e-120 434.9 443 59.8
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 9.7e-120 434.5 444 59.9
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.4e-118 430.6 440 60.2
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.6e-117 427.2 445 58.7
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 7.7e-117 424.9 440 59.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.9e-116 422.9 436 59.6
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 2.3e-113 413.3 446 58.5
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 5.2e-113 412.1 440 58.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 5.2e-113 412.1 386 63.5
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 8.8e-113 411.4 437 61.1
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 8.8e-113 411.4 440 58.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-111 405.2 379 64.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 8.3e-111 404.8 446 58.5
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 7.0e-110 401.7 413 60.0
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 9.1e-110 401.4 436 61.2
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.9e-107 393.7 436 60.6
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.5e-107 393.3 478 53.1
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.0e-100 371.3 453 52.5
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.8e-98 363.2 358 63.7
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-96 356.3 352 63.1
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-94 350.9 315 66.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 7.8e-93 345.1 449 50.8
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.1e-91 341.3 356 56.7
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 9.8e-88 328.2 430 50.7
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-86 324.3 374 55.1
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.2e-85 321.2 419 50.1
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.7e-84 317.4 374 54.5
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 6.2e-82 308.9 419 50.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 8.1e-82 308.5 270 65.6
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.6e-80 303.5 457 47.3
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 4.4e-80 302.8 469 43.7
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 4.7e-74 282.7 463 44.5
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.0e-72 277.3 387 47.0
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 4.9e-71 272.7 278 58.3
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.1e-66 255.4 226 67.3
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.0e-64 250.8 336 50.9
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 3.3e-59 233.4 369 47.2
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 7.3e-59 232.3 276 56.2
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 3.4e-56 223.4 251 56.2
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 6.4e-55 219.2 189 61.9
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.3e-52 211.5 188 66.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.6e-51 205.3 308 48.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.1e-45 187.6 455 34.7
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.5e-45 186.8 380 36.8
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.9e-43 181.0 249 51.4
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.9e-43 181.0 366 39.3
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.5e-43 180.6 168 63.1
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-42 177.2 191 58.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.5e-39 166.0 144 66.0
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 2.7e-37 160.6 271 43.9
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 5.1e-36 156.4 438 32.6
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.6e-34 151.4 149 60.4
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.0e-31 139.8 136 64.0
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.7e-28 129.0 174 52.9
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-27 128.6 123 60.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 5.0e-23 113.2 165 47.3
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 2.5e-19 100.9 74 74.3
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 8.2e-18 95.9 67 79.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 4.1e-17 93.6 107 57.0
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 2.6e-16 90.9 147 46.3
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.2e-13 82.0 95 57.9
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 4.7e-13 80.1 93 53.8
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 7.9e-13 79.3 189 38.6
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 4.1e-09 67.0 129 38.8
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 5.0e-07 60.1 37 78.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 8.5e-07 59.3 184 28.3


User provided reference genes

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