Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.2e-71 272.3 149 100.0
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.0e-56 222.6 148 85.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.1e-54 216.9 148 84.5
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 4.3e-51 204.9 157 75.8
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.1e-41 173.7 158 57.0
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.4e-41 173.3 158 53.8
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.4e-41 173.3 158 55.7
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.4e-41 173.3 158 55.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.3e-41 172.6 140 57.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.3e-41 172.6 158 55.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-40 170.2 158 53.8
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.5e-40 169.9 138 60.1
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.9e-39 165.6 133 60.9
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.1e-38 163.7 149 55.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-38 162.9 133 59.4
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-38 162.9 140 56.4
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.9e-38 162.9 139 60.4
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.4e-38 162.5 155 58.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 4.1e-38 161.8 138 57.2
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.1e-38 161.8 95 74.7
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.1e-38 161.8 102 70.6
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 5.4e-38 161.4 99 70.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.1e-38 161.0 138 56.5
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 9.2e-38 160.6 139 57.6
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 9.2e-38 160.6 149 53.7
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.2e-37 160.2 150 61.3
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.6e-37 159.8 149 52.3
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.6e-37 159.8 135 57.0
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.1e-37 159.5 129 62.0
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.1e-37 159.5 131 58.0
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.7e-37 159.1 148 60.1
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.5e-37 158.7 104 70.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.6e-37 158.3 146 55.5
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.6e-37 158.3 146 55.5
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.6e-37 158.3 157 52.9
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 4.6e-37 158.3 122 71.3
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 6.0e-37 157.9 140 64.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 7.8e-37 157.5 107 68.2
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.8e-37 157.5 155 56.1
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 7.8e-37 157.5 145 53.1
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.7e-36 156.4 150 54.7
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 1.7e-36 156.4 100 69.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.7e-36 156.4 142 57.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.7e-36 156.4 140 64.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.7e-36 156.4 141 61.7
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.3e-36 156.0 139 56.1
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.3e-36 156.0 126 58.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.0e-36 155.6 123 61.8
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 3.9e-36 155.2 149 55.0
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 3.9e-36 155.2 157 52.2
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.9e-36 155.2 149 53.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.9e-36 155.2 147 61.2
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 5.1e-36 154.8 140 55.7
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 6.6e-36 154.5 128 68.0
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 8.6e-36 154.1 143 60.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.1e-35 153.7 160 60.0
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.1e-35 153.7 93 68.8
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.1e-35 153.7 131 59.5
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.1e-35 153.7 140 52.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.5e-35 153.3 148 54.1
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.9e-35 152.9 155 52.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.5e-35 152.5 155 51.6
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.5e-35 152.5 96 69.8
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.3e-35 152.1 115 64.3
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 4.3e-35 151.8 154 51.9
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 4.3e-35 151.8 152 53.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 5.6e-35 151.4 122 57.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 7.3e-35 151.0 152 57.2
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 9.5e-35 150.6 79 78.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 9.5e-35 150.6 136 52.9
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 9.5e-35 150.6 148 61.5
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.5e-35 150.6 139 61.2
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 9.5e-35 150.6 149 61.1
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 9.5e-35 150.6 135 60.0
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.2e-34 150.2 145 51.0
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.2e-34 150.2 146 61.6
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.2e-34 150.2 137 56.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.2e-34 150.2 126 57.1
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.6e-34 149.8 86 72.1
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 2.1e-34 149.4 139 64.7
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.1e-34 149.4 139 64.7
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.8e-34 149.1 149 57.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 3.6e-34 148.7 141 62.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.6e-34 148.7 140 61.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 4.7e-34 148.3 159 57.9
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.7e-34 148.3 164 53.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 4.7e-34 148.3 157 57.3
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.1e-34 147.5 149 55.0
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 8.1e-34 147.5 152 60.5
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 8.1e-34 147.5 109 64.2
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.4e-33 146.7 145 51.7
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-33 146.7 151 58.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-33 146.7 151 58.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-33 146.7 151 58.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.4e-33 146.7 157 48.4
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.1e-33 145.6 141 57.4
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.2e-33 144.8 154 60.4
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 6.8e-33 144.4 79 78.5
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 8.9e-33 144.1 98 66.3
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.6e-32 142.5 74 81.1
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.4e-32 142.1 142 62.0
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 4.4e-32 141.7 89 67.4
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.4e-32 141.7 97 64.9
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.2e-31 139.4 100 63.0
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.9e-31 139.0 85 70.6
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.8e-31 138.7 150 50.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.8e-31 138.7 150 53.3
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 6.4e-31 137.9 108 60.2
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 8.4e-31 137.5 146 60.3
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.1e-30 135.2 152 48.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.1e-30 134.4 73 78.1
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 9.2e-30 134.0 147 49.7
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 4.3e-27 125.2 76 72.4
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 4.3e-27 125.2 103 56.3
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.2e-26 123.6 115 57.4
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.1e-26 122.9 142 50.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 3.1e-25 119.0 135 57.8
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-24 117.1 155 41.9
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 3.4e-24 115.5 85 60.0
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 8.4e-23 110.9 96 63.5
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 2.4e-22 109.4 106 63.2
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 4.2e-22 108.6 111 61.3
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.2e-21 107.1 54 77.8
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.7e-20 103.2 52 78.8
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 8.7e-20 100.9 77 55.8
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.5e-19 100.1 123 42.3
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.9e-19 99.8 90 58.9
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 6.2e-18 94.7 72 55.6
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 2.4e-17 92.8 81 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 3.1e-17 92.4 86 52.3
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.8e-15 85.5 90 50.0
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 4.2e-14 82.0 81 50.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 7.1e-14 81.3 97 56.7
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.5e-11 73.6 80 43.8
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.9e-11 73.2 80 45.0
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 2.5e-11 72.8 129 42.6
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 9.6e-11 70.9 74 58.1
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.3e-10 70.5 63 54.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 3.4e-08 62.4 49 55.1
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 3.4e-08 62.4 40 62.5
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 3.2e-06 55.8 40 52.5
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 5.5e-06 55.1 39 53.8


User provided reference genes

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