Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 2.1e-46 188.7 98 100.0
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 1.6e-43 179.1 98 93.9
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 6.9e-42 173.7 98 91.8
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 5.9e-33 144.1 98 78.6
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 3.0e-29 131.7 99 74.7
Sed0014350 Sechium edule HOM05D005811 ORTHO05D007070 3.7e-27 124.8 98 71.4
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 1.2e-25 119.8 100 71.0
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 4.5e-25 117.9 99 68.7
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 4.5e-25 117.9 99 67.7
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.3e-24 116.3 97 69.1
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 2.9e-24 115.2 99 66.7
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 3.8e-24 114.8 97 68.0
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 5.0e-24 114.4 97 68.0
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 6.5e-24 114.0 100 71.0
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 1.1e-23 113.2 102 66.7
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 1.1e-23 113.2 96 68.8
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 3.2e-23 111.7 96 66.7
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 3.2e-23 111.7 96 67.7
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 9.4e-23 110.2 97 68.0
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 1.6e-22 109.4 102 65.7
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 2.7e-22 108.6 96 63.5
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 3.6e-22 108.2 97 62.9
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 3.6e-22 108.2 96 65.6
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 3.0e-21 105.1 98 64.3
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 6.7e-21 104.0 96 60.4
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 6.7e-21 104.0 99 63.6
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 2.6e-20 102.1 104 56.7
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 2.6e-20 102.1 97 62.9
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 2.6e-20 102.1 97 60.8
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 2.6e-20 102.1 99 58.6
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 2.6e-20 102.1 96 65.6
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 9.7e-20 100.1 98 62.2
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 9.7e-20 100.1 104 59.6
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 1.3e-19 99.8 96 64.6
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 1.7e-19 99.4 99 64.6
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 1.7e-19 99.4 99 64.6
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 1.1e-18 96.7 104 62.5
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 1.4e-18 96.3 96 63.5
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.4e-18 96.3 100 60.0
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 2.4e-18 95.5 97 58.8
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.1e-18 95.1 100 60.0
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 4.1e-18 94.7 99 63.6
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 4.1e-18 94.7 97 57.7
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 4.1e-18 94.7 97 57.7
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 5.3e-18 94.4 96 62.5
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 7.0e-18 94.0 101 58.4
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 7.0e-18 94.0 100 58.0
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 9.1e-18 93.6 97 59.8
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 9.1e-18 93.6 96 64.6
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 1.6e-17 92.8 101 59.4
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 2.6e-17 92.0 104 55.8
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 5.9e-17 90.9 92 58.7
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 5.9e-17 90.9 99 56.6
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 2.2e-16 89.0 105 55.2
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 2.2e-16 89.0 92 59.8
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 2.9e-16 88.6 90 61.1
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 8.5e-16 87.0 105 54.3
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 1.5e-15 86.3 103 54.4
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 1.9e-15 85.9 97 56.7
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 4.2e-15 84.7 103 52.4
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 5.5e-15 84.3 101 52.5
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 5.5e-15 84.3 101 52.5
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 5.5e-15 84.3 101 52.5
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 7.2e-15 84.0 113 54.0
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 9.4e-15 83.6 97 54.6
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 9.4e-15 83.6 97 54.6
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 1.2e-14 83.2 100 54.0
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 1.2e-14 83.2 100 51.0
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 1.6e-14 82.8 106 52.8
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 1.6e-14 82.8 92 55.4
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 2.7e-14 82.0 101 51.5
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 2.7e-14 82.0 101 51.5
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 2.7e-14 82.0 100 52.0
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.0e-13 80.1 101 50.5
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 1.8e-13 79.3 118 53.4
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.8e-13 79.3 86 60.5
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 2.3e-13 79.0 105 47.6
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 2.3e-13 79.0 109 46.8
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 3.0e-13 78.6 96 51.0
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 3.0e-13 78.6 96 51.0
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 4.0e-13 78.2 104 51.9
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 8.8e-13 77.0 102 55.9
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 8.8e-13 77.0 86 53.5
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 1.2e-12 76.6 107 52.3
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 1.5e-12 76.3 98 51.0
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 1.5e-12 76.3 96 47.9
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 1.5e-12 76.3 96 47.9
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 1.5e-12 76.3 62 71.0
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 2.6e-12 75.5 96 47.9
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 2.6e-12 75.5 86 58.1
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 4.4e-12 74.7 103 47.6
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 4.4e-12 74.7 74 60.8
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 7.5e-12 73.9 93 43.0
Nn3g20363 Nelumbo nucifera HOM05D005811 ORTHO05D007070 7.5e-12 73.9 77 59.7
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 9.8e-12 73.6 58 67.2
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 1.7e-11 72.8 104 47.1
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 1.7e-11 72.8 104 47.1
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 1.7e-11 72.8 104 47.1
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 1.7e-11 72.8 104 47.1
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 2.2e-11 72.4 104 47.1
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 2.2e-11 72.4 104 47.1
Nn1g05379 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.2e-11 72.4 60 65.0
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 2.8e-11 72.0 94 44.7
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 2.8e-11 72.0 100 50.0
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 6.3e-11 70.9 99 49.5
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 2.4e-10 68.9 105 50.5
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 3.1e-10 68.6 104 45.2
Peaxi162Scf01058g00001 Petunia axillaris HOM05D005811 ORTHO05D007070 4.1e-10 68.2 74 62.2
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 4.1e-10 68.2 118 39.8
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 1.6e-09 66.2 107 48.6
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 2.7e-09 65.5 56 69.6
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 3.5e-09 65.1 102 44.1
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 3.5e-09 65.1 102 44.1
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.0e-08 63.5 102 43.1
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.0e-08 63.5 102 43.1
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 1.0e-08 63.5 100 46.0
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 5.0e-08 61.2 89 48.3
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 6.5e-08 60.8 88 48.9
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 1.1e-07 60.1 96 47.9
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 1.1e-07 60.1 100 46.0
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.9e-07 59.3 102 41.2
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 1.9e-07 59.3 80 45.0
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 3.2e-07 58.5 112 47.3
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 3.2e-07 58.5 71 53.5
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 9.4e-07 57.0 65 52.3
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 1.2e-06 56.6 108 43.5
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 2.7e-06 55.5 62 51.6
Os07g0243150 Oryza sativa ssp. japonica HOM05D019609 ORTHO05D007070 8.0e-06 53.9 84 45.2


User provided reference genes

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