Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 3.0e-298 1027.7 511 100.0
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 2.3e-266 921.8 511 90.4
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 3.1e-266 921.4 511 90.2
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 3.9e-261 904.4 511 87.5
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 2.2e-211 739.2 485 74.6
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 2.2e-208 729.2 485 74.4
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 2.5e-207 725.7 516 70.7
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 2.1e-206 722.6 512 69.9
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 3.6e-206 721.8 512 68.9
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 1.1e-204 716.8 512 69.3
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 2.6e-204 715.7 515 70.3
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 2.6e-204 715.7 511 68.1
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 7.4e-204 714.1 511 68.1
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 1.3e-203 713.4 497 70.8
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 1.4e-202 709.9 502 68.5
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 5.3e-202 708.0 512 69.1
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 9.1e-202 707.2 513 68.8
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 1.2e-201 706.8 513 67.8
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 1.5e-201 706.4 514 68.3
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 2.6e-201 705.7 497 70.6
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 5.9e-201 704.5 518 67.6
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 1.3e-200 703.4 490 71.6
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 1.3e-200 703.4 512 68.9
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 2.9e-200 702.2 519 68.6
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 3.8e-200 701.8 515 67.8
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 5.0e-200 701.4 457 74.4
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 1.4e-199 699.9 513 69.0
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 1.9e-199 699.5 518 68.0
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 1.2e-198 696.8 513 68.6
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 1.6e-198 696.4 466 72.7
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 1.6e-198 696.4 512 67.0
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 3.6e-198 695.3 500 68.6
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 4.7e-198 694.9 512 66.4
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 1.0e-197 693.7 513 68.0
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 1.0e-197 693.7 511 67.1
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 2.3e-197 692.6 543 66.1
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 2.3e-197 692.6 513 66.9
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 1.5e-196 689.9 513 67.8
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 2.6e-196 689.1 471 71.1
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 4.4e-196 688.3 498 68.3
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 1.3e-195 686.8 512 66.2
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 2.8e-195 685.6 471 70.7
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 8.2e-195 684.1 515 65.6
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 1.1e-194 683.7 515 67.0
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 2.4e-194 682.6 471 70.7
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 1.6e-193 679.9 517 66.5
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 1.6e-193 679.9 514 66.7
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 4.5e-193 678.3 515 66.0
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 6.5e-192 674.5 513 65.9
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 1.5e-191 673.3 512 65.6
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 2.1e-190 669.5 449 72.4
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 4.0e-189 665.2 488 68.0
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 3.3e-188 662.1 508 66.5
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 9.7e-188 660.6 471 69.0
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 2.5e-183 646.0 483 65.0
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 2.5e-183 646.0 452 68.4
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 3.6e-182 642.1 479 67.6
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 5.2e-181 638.3 459 69.5
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 2.8e-179 632.5 495 62.6
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 8.3e-179 630.9 448 67.9
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 8.3e-179 630.9 495 62.4
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 2.0e-177 626.3 472 65.0
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 4.5e-177 625.2 469 64.6
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 1.3e-176 623.6 455 66.8
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 2.9e-176 622.5 512 60.5
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.1e-175 620.5 512 60.7
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.5e-175 620.2 512 60.5
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 7.2e-175 617.8 450 66.9
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 4.7e-174 615.1 489 63.8
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 1.7e-171 606.7 446 65.7
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 4.9e-171 605.1 517 59.0
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 6.3e-171 604.7 522 59.6
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 1.1e-170 604.0 475 63.8
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 1.8e-170 603.2 518 60.4
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 3.1e-170 602.4 520 59.2
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 3.1e-170 602.4 512 60.2
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 1.6e-169 600.1 473 62.6
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 3.5e-169 599.0 440 66.8
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 4.5e-169 598.6 513 59.5
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 5.9e-169 598.2 443 66.6
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 2.9e-168 595.9 473 63.4
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 2.9e-168 595.9 514 59.7
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 3.8e-168 595.5 413 69.2
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 3.3e-167 592.4 518 59.3
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 4.3e-167 592.0 476 62.2
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 4.3e-167 592.0 476 62.0
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 1.2e-166 590.5 524 58.2
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 3.6e-166 589.0 522 58.2
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 4.0e-165 585.5 442 64.7
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 2.7e-161 572.8 466 61.6
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 1.3e-160 570.5 517 58.0
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 3.9e-160 568.9 514 55.4
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 2.5e-151 539.7 380 69.5
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 1.2e-145 520.8 397 64.5
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 1.5e-140 503.8 353 66.9
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 9.9e-140 501.1 426 58.2
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 1.6e-134 483.8 429 55.2
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 5.8e-132 475.3 459 52.7
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 1.3e-126 457.6 418 59.1
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 6.0e-121 438.7 296 70.9
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 9.3e-114 414.8 342 59.4
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 1.0e-104 384.8 423 44.4
Hma1.2p1_0146F.1_g065520 Hydrangea macrophylla HOM05D006841 ORTHO05D008607 6.3e-102 375.6 257 69.6
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.3e-94 349.0 422 47.4
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 6.5e-91 339.0 262 65.6
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 3.0e-88 330.1 446 41.3
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 5.2e-80 302.8 240 65.4
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 1.5e-66 258.1 425 36.5
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 4.2e-66 256.5 150 80.0
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 6.8e-64 249.2 421 34.2
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 4.5e-60 236.5 134 82.8
Oeu034210.1 Olea europaea HOM05D009051 ORTHO05D000140 1.2e-44 185.3 171 54.4
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 4.3e-34 150.2 194 42.8
Oeu034517.1 Olea europaea HOM05D006841 ORTHO05D008607 2.1e-33 147.9 228 40.8
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 1.4e-32 145.2 126 58.7
Oeu034513.1 Olea europaea HOM05D006841 ORTHO05D008607 3.4e-31 140.6 228 37.7
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 4.4e-31 140.2 125 58.4
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 2.4e-29 134.4 141 51.1
Oeu019495.1 Olea europaea HOM05D006841 ORTHO05D008607 1.1e-13 82.4 103 42.7


User provided reference genes

Program Settings