Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.2e-253 879.4 452 100.0
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.1e-232 809.7 452 92.3
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 4.9e-199 698.0 482 74.1
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.9e-195 686.0 454 76.4
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 3.6e-194 681.8 454 75.8
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.6e-194 681.8 454 77.1
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 5.2e-193 677.9 451 75.4
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.5e-192 676.4 452 74.6
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.5e-192 676.4 453 75.1
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 2.6e-192 675.6 452 74.8
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 3.4e-192 675.2 451 74.9
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 9.8e-192 673.7 460 73.0
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.7e-191 672.9 445 76.2
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 2.2e-191 672.5 449 75.3
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 3.7e-191 671.8 460 72.6
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 1.9e-190 669.5 449 74.8
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.2e-189 666.8 463 72.8
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 2.0e-189 666.0 447 76.1
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.0e-189 666.0 452 74.1
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 3.5e-189 665.2 457 74.4
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.5e-187 659.8 452 71.9
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 2.5e-187 659.1 452 73.5
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 7.3e-187 657.5 449 73.7
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 7.3e-187 657.5 454 74.0
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 9.5e-187 657.1 449 74.4
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.2e-186 656.8 425 76.7
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 2.1e-186 656.0 351 94.9
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 3.7e-183 645.2 451 72.5
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 3.2e-182 642.1 449 72.8
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 4.1e-182 641.7 442 74.9
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 6.0e-181 637.9 447 71.6
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 7.8e-181 637.5 450 70.2
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 1.1e-179 633.6 426 74.2
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.9e-179 632.9 449 71.3
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 4.3e-179 631.7 449 71.3
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.6e-178 629.8 401 78.1
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 2.1e-178 629.4 432 73.4
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.4e-177 625.9 432 72.5
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 3.1e-177 625.5 449 71.5
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 2.0e-176 622.9 451 70.1
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 7.6e-176 620.9 449 69.7
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 2.2e-175 619.4 400 77.2
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 2.4e-174 615.9 454 70.0
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 4.1e-174 615.1 449 69.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 4.1e-174 615.1 450 69.3
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 7.1e-174 614.4 399 75.9
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 2.3e-172 609.4 441 70.3
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.5e-171 605.9 422 72.0
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.5e-171 605.9 422 72.0
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 7.3e-171 604.4 456 68.9
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 9.6e-171 604.0 458 69.2
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 9.0e-169 597.4 426 71.6
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 7.6e-168 594.3 458 66.6
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 1.9e-166 589.7 397 74.8
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 5.1e-164 581.6 431 67.5
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.5e-163 580.1 400 70.8
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 3.6e-162 575.5 664 50.3
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 6.2e-162 574.7 557 56.6
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 8.1e-162 574.3 435 64.8
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.1e-158 563.9 460 64.3
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 2.1e-157 559.7 363 77.1
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 7.9e-157 557.8 461 65.5
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.9e-155 553.1 453 64.5
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.1e-153 547.4 445 63.6
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.5e-152 543.5 445 62.5
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.9e-150 536.6 359 73.8
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.2e-149 533.9 380 69.5
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 3.7e-146 522.3 343 74.9
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 4.8e-146 521.9 450 61.8
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 4.0e-145 518.8 436 64.2
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 4.0e-145 518.8 448 61.4
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 9.0e-145 517.7 557 51.9
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 2.6e-144 516.2 373 69.2
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 5.8e-144 515.0 448 61.4
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.9e-142 510.0 291 89.0
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 9.3e-142 507.7 460 60.2
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.2e-136 490.7 435 57.0
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 4.2e-134 482.3 320 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 4.6e-133 478.8 420 56.7
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 9.1e-129 464.5 488 54.3
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 6.5e-127 458.4 440 54.1
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 4.7e-125 452.2 320 70.3
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.8e-124 450.3 435 54.5
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 8.8e-124 448.0 295 76.3
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.6e-123 446.4 458 54.8
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 3.3e-123 446.0 298 73.5
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.5e-107 394.0 283 68.9
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 8.8e-100 368.2 301 63.8
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 1.1e-97 361.3 246 72.8
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 1.9e-94 350.5 460 43.3
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 6.1e-85 318.9 330 52.7
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.6e-83 313.5 225 69.8
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 9.2e-81 305.1 441 38.1
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 1.7e-79 300.8 229 69.4
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 2.3e-71 273.9 469 36.7
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.9e-70 270.8 172 80.8
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.1e-65 255.0 213 61.0
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 8.1e-53 212.2 155 69.0
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.0e-47 195.3 174 60.9
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.8e-44 184.5 148 62.2
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.2e-42 177.6 418 31.1
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.1e-40 171.0 101 81.2
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 4.6e-40 169.9 127 67.7
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 7.4e-38 162.5 120 70.8
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 4.8e-37 159.8 107 77.6
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.2e-35 155.2 107 78.5
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.2e-35 155.2 107 78.5
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 1.9e-30 137.9 75 86.7
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 3.4e-19 100.5 62 72.6
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 5.3e-12 76.6 53 66.0
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 3.4e-11 73.9 74 55.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-09 68.6 47 76.6
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 2.7e-08 64.3 215 26.0
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.3e-07 61.2 39 71.8


User provided reference genes

Program Settings