Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1717.2 926 100.0
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1466.1 861 93.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1451.8 857 92.5
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1385.9 844 90.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1354.3 857 86.7
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1241.5 861 79.0
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1241.1 864 78.8
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1239.9 857 77.7
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1236.5 839 78.5
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1230.7 854 78.7
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1226.8 839 79.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1226.5 833 78.8
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1224.9 833 78.6
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1220.7 833 78.4
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1220.7 857 75.6
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1218.4 839 76.9
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1218.4 857 75.5
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1216.1 833 78.2
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1215.3 833 78.0
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1212.6 799 80.2
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1210.3 865 75.7
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1203.3 828 78.4
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1192.6 863 76.6
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1189.5 841 78.0
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1189.5 858 76.6
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1187.2 837 75.7
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1185.2 857 76.0
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1181.8 870 74.4
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1179.1 856 75.7
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1176.0 839 77.6
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1175.2 851 75.8
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1174.8 864 75.6
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1173.7 844 75.9
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1173.7 850 76.0
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1173.3 852 76.4
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1172.1 806 78.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1171.0 861 75.6
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1168.7 839 74.3
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1167.5 857 75.1
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1164.4 853 75.7
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1164.4 860 72.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 861 75.4
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1153.3 943 68.7
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1149.0 859 72.6
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1149.0 880 74.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1147.1 801 75.7
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1146.7 857 71.2
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1143.3 857 71.1
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 826 74.5
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1141.3 850 74.7
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 853 70.5
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1138.6 857 70.8
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1129.4 765 77.4
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1128.2 839 71.8
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1126.3 855 73.0
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 766 76.9
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1124.0 838 69.6
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1123.6 858 70.9
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 798 74.1
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 858 72.7
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 837 74.4
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1117.8 839 70.4
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 834 70.1
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1111.3 836 71.7
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 839 72.9
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 831 70.9
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1106.7 831 71.1
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 798 73.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1105.1 796 72.6
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 846 70.8
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1101.7 841 70.2
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1100.5 802 71.9
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1100.5 862 68.1
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 848 69.9
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 835 69.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 848 69.8
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1096.6 801 71.8
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 802 71.7
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 841 69.4
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 802 71.6
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1093.2 835 70.5
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 864 69.2
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 769 72.2
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 854 68.1
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 838 68.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 804 70.9
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 1.8e-309 1065.8 904 65.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 2.4e-309 1065.4 857 67.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 2.0e-308 1062.4 843 67.9
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 7.2e-306 1053.9 831 66.9
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.8e-304 1049.3 742 72.5
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.8e-302 1042.0 917 62.5
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 3.6e-297 1025.0 681 76.8
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 7.7e-292 1007.3 847 64.8
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 2.9e-291 1005.4 853 64.5
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 8.5e-291 1003.8 679 74.1
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 3.6e-289 998.4 838 62.9
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 6.3e-286 987.6 662 76.4
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 5.9e-284 981.1 662 76.0
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 5.9e-284 981.1 834 62.5
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 5.5e-282 974.5 772 68.8
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 9.7e-279 963.8 766 67.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 7.0e-277 957.6 634 75.7
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.7e-275 953.0 949 59.7
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.8e-272 943.0 641 76.1
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.6e-268 929.9 796 60.7
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.2e-260 903.7 846 60.5
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 1.5e-255 886.7 580 77.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 7.5e-255 884.4 839 55.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.9e-254 881.7 843 55.6
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.1e-244 849.7 800 55.5
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 2.4e-229 799.7 813 52.5
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 9.0e-224 781.2 847 55.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.4e-223 779.2 851 56.2
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.1e-200 704.5 430 84.2
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.8e-168 597.4 483 67.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.2e-157 558.9 439 69.7
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 2.5e-141 507.3 332 79.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 2.1e-127 461.1 790 37.1
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 7.3e-125 452.6 307 73.6
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 3.6e-124 450.3 798 35.1
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.3e-118 431.8 402 64.7
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 7.3e-117 426.0 388 58.8
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.6e-116 423.7 265 80.4
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 3.9e-102 377.1 874 32.4
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.8e-90 336.7 279 67.0
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-78 299.3 305 56.7
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.1e-61 242.7 230 61.3
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 4.5e-50 204.1 137 72.3
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 6.5e-49 200.3 180 59.4
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 2.4e-43 181.8 145 63.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.9e-42 177.2 142 71.1
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 3.5e-34 151.4 121 71.1
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.7e-34 150.2 147 55.8
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-33 149.8 147 55.8
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.6e-31 142.5 156 54.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.3e-17 96.3 70 68.6
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 8.3e-12 77.0 94 50.0
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 2.3e-06 58.9 63 52.4


User provided reference genes

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