Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.5e-178 629.4 320 100.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.0e-151 539.3 330 85.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.0e-150 535.4 330 85.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.4e-130 468.4 296 81.8
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.6e-111 405.2 268 80.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.4e-109 397.9 319 67.4
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.1e-108 396.4 298 67.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.8e-107 393.3 291 69.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.8e-107 393.3 334 62.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.4e-107 392.9 323 63.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 9.0e-107 391.0 326 63.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.2e-106 390.6 246 76.8
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.6e-106 389.4 300 66.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.4e-106 389.0 260 71.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.5e-106 388.7 300 67.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 4.5e-106 388.7 325 64.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.5e-106 388.7 336 61.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.5e-106 388.7 291 66.7
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.6e-106 387.9 249 75.5
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.6e-106 387.9 268 72.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.6e-106 387.9 336 61.6
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.0e-105 387.5 297 67.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.7e-105 386.7 267 71.2
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.2e-105 386.3 300 66.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.2e-105 386.3 296 66.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.2e-105 386.3 297 68.0
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.9e-105 386.0 251 73.3
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.9e-105 386.0 247 74.9
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.9e-105 386.0 273 70.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.8e-105 385.6 249 75.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.9e-105 385.2 311 63.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 6.5e-105 384.8 300 66.0
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 6.5e-105 384.8 316 64.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 8.4e-105 384.4 295 65.8
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.4e-105 384.4 291 66.7
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.4e-105 384.4 291 66.7
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 8.4e-105 384.4 246 76.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 8.4e-105 384.4 298 65.8
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.1e-104 384.0 302 63.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.4e-104 383.6 290 69.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.4e-104 383.6 316 63.9
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.9e-104 383.3 246 75.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.9e-104 383.3 299 66.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.5e-104 382.9 292 65.1
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.5e-104 382.9 254 74.0
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 3.2e-104 382.5 311 65.9
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 4.2e-104 382.1 297 67.3
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 9.3e-104 380.9 312 64.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 9.3e-104 380.9 325 62.2
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 9.3e-104 380.9 299 64.5
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.2e-103 380.6 318 62.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.2e-103 380.6 243 75.7
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.6e-103 380.2 296 65.5
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.6e-103 380.2 321 62.3
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.1e-103 379.8 323 60.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.1e-103 379.8 306 63.7
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.7e-103 379.4 255 73.3
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.5e-103 379.0 316 63.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.9e-103 377.9 277 67.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.0e-102 377.5 292 67.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-102 377.1 289 65.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.8e-102 376.7 291 64.3
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.0e-102 375.9 249 71.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 5.1e-102 375.2 275 70.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 8.7e-102 374.4 312 63.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 8.7e-102 374.4 296 64.9
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 8.7e-102 374.4 304 62.8
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.1e-101 374.0 244 73.0
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.5e-101 372.9 311 62.7
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.3e-101 372.1 284 66.2
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 4.3e-101 372.1 242 74.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 7.4e-101 371.3 295 63.7
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 9.6e-101 370.9 319 61.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-100 370.5 241 73.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.6e-100 370.2 290 67.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.6e-100 370.2 244 72.5
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.7e-100 369.0 245 72.2
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 8.2e-100 367.9 299 65.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.1e-99 367.5 284 64.4
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.8e-99 366.7 249 71.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.4e-99 366.3 281 66.5
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.3e-99 365.2 261 70.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 9.0e-99 364.4 249 69.5
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.0e-98 363.2 297 65.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.4e-98 362.5 242 71.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.9e-97 359.4 292 63.4
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 8.5e-97 357.8 300 60.7
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.9e-96 356.7 291 61.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.7e-95 352.8 291 60.1
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.0e-94 349.4 279 63.1
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-92 342.8 335 54.9
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.4e-91 340.5 310 60.0
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.6e-90 336.3 282 62.1
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.6e-90 336.3 346 53.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 7.7e-90 334.7 301 58.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.9e-89 332.8 309 59.9
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.5e-88 329.7 301 58.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 6.1e-87 325.1 259 63.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.9e-86 322.4 212 73.1
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 8.2e-84 314.7 324 53.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-83 313.9 241 65.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.5e-82 310.5 415 45.8
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-81 306.6 271 60.9
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.5e-80 303.1 249 63.1
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.2e-79 300.8 212 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.8e-78 297.0 279 53.4
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.3e-76 290.8 248 59.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.7e-76 289.3 241 57.7
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 3.1e-75 286.2 215 67.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.7e-74 281.6 175 79.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-73 280.8 253 58.5
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 5.7e-69 265.4 168 77.4
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.2e-68 263.5 164 76.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.0e-66 256.9 284 48.9
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-65 254.6 231 57.1
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.5e-64 250.0 159 76.1
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.6e-63 247.3 144 83.3
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 6.8e-62 241.9 212 55.7
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-56 223.8 182 62.6
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 9.5e-56 221.5 137 78.1
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.4e-54 217.6 247 44.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.4e-54 217.6 234 53.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-53 214.2 224 53.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.4e-53 212.6 137 75.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 4.4e-53 212.6 251 48.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 9.8e-53 211.5 130 77.7
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-50 204.1 237 43.0
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.1e-48 198.0 129 78.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.0e-47 191.8 206 54.4
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.6e-45 186.8 113 77.0
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.2e-43 179.9 110 75.5
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.7e-42 176.8 238 42.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.8e-42 175.3 196 49.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 7.8e-42 175.3 204 51.0
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 5.0e-41 172.6 136 63.2
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 5.0e-41 172.6 136 63.2
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.6e-37 160.2 92 81.5
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.7e-36 157.5 164 52.4
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 8.3e-36 155.2 110 64.5
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-35 154.8 227 38.3
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.1e-35 154.8 110 69.1
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.9e-32 144.1 191 43.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.7e-31 139.4 76 85.5
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.3e-30 137.1 131 52.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 8.9e-30 135.2 239 36.8
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.4e-29 133.3 76 80.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.2e-27 126.7 70 82.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 9.2e-27 125.2 239 36.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.5e-26 123.2 102 59.8
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.3e-24 115.5 82 64.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.8e-22 110.9 63 81.0
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.8e-22 110.9 66 69.7
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.2e-22 109.4 64 79.7
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.9e-20 103.6 86 53.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.0e-17 95.1 128 41.4
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.2e-15 88.2 59 64.4
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.8e-15 87.0 46 76.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 6.2e-15 85.9 77 51.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 7.6e-13 79.0 93 47.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.6e-10 71.2 102 41.2
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.3e-09 68.2 70 52.9
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.1e-08 65.1 48 54.2
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 9.6e-08 62.0 34 73.5
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 6.2e-07 59.3 45 60.0


User provided reference genes

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