Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 3.6e-275 951.0 515 100.0
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 2.3e-176 622.9 698 58.2
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 9.9e-172 607.4 698 57.0
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 3.2e-138 496.1 820 46.0
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 1.6e-84 317.8 672 37.5
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 2.0e-84 317.4 689 35.6
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 5.0e-83 312.8 687 35.2
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 2.5e-82 310.5 680 36.3
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.2e-79 301.6 687 36.7
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 2.2e-78 297.4 675 35.6
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 2.2e-78 297.4 678 35.3
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 2.8e-78 297.0 693 35.1
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 3.7e-78 296.6 688 36.3
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 4.9e-78 296.2 692 34.8
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 5.9e-76 289.3 690 35.4
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 1.3e-75 288.1 680 35.1
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 1.3e-75 288.1 649 34.2
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 1.5e-74 284.6 690 34.8
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 4.3e-74 283.1 728 34.9
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 5.6e-74 282.7 672 34.7
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.3e-72 277.3 640 34.7
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 2.9e-70 270.4 673 32.4
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 6.4e-70 269.2 669 33.3
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 1.2e-68 265.0 713 33.1
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 1.7e-67 261.2 679 33.3
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 3.9e-67 260.0 687 32.9
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 5.0e-67 259.6 690 33.6
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 6.6e-67 259.2 674 33.2
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 1.5e-66 258.1 702 31.6
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 7.3e-66 255.8 646 35.0
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 1.6e-65 254.6 649 31.0
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 1.6e-65 254.6 684 32.2
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 1.6e-65 254.6 691 33.7
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 2.3e-64 250.8 727 31.4
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 2.6e-63 247.3 653 30.8
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 2.6e-63 247.3 660 31.8
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 2.6e-63 247.3 652 31.3
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 2.2e-62 244.2 648 30.9
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 4.9e-62 243.0 675 32.1
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 1.4e-61 241.5 642 32.7
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 1.4e-61 241.5 801 29.8
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 1.9e-61 241.1 673 32.4
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 2.4e-61 240.7 733 30.3
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 5.4e-61 239.6 700 32.6
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 1.2e-60 238.4 736 29.6
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 3.5e-60 236.9 650 30.3
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 4.6e-60 236.5 659 29.0
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 6.0e-60 236.1 653 29.9
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 7.8e-60 235.7 652 31.1
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 2.3e-59 234.2 686 30.5
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 6.6e-59 232.6 715 31.3
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 2.5e-58 230.7 644 29.0
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 1.2e-57 228.4 522 36.6
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.1e-57 227.6 657 29.7
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 2.8e-57 227.3 775 29.2
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 3.6e-57 226.9 671 31.4
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 3.6e-57 226.9 673 29.7
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 6.2e-57 226.1 673 30.5
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 3.1e-56 223.8 673 31.2
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 5.2e-56 223.0 602 34.1
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 8.9e-56 222.2 673 29.9
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 1.2e-55 221.9 684 30.3
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 1.5e-55 221.5 667 30.7
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 1.5e-55 221.5 800 29.2
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 2.0e-55 221.1 624 31.7
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 4.4e-55 219.9 649 29.0
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 5.8e-55 219.5 652 29.6
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 9.9e-55 218.8 678 29.8
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 2.9e-54 217.2 697 29.8
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 4.9e-54 216.5 685 29.5
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 2.1e-52 211.1 662 28.5
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 2.1e-52 211.1 652 29.6
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 2.7e-52 210.7 653 29.1
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 2.7e-52 210.7 645 28.8
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 3.5e-52 210.3 656 29.4
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 1.0e-51 208.8 656 29.4
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 1.5e-50 204.9 648 29.6
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 1.9e-50 204.5 658 31.8
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.5e-50 204.1 648 29.9
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 9.6e-50 202.2 648 29.3
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 9.6e-50 202.2 646 28.2
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 1.2e-49 201.8 648 29.3
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 4.7e-49 199.9 691 29.8
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 3.8e-46 190.3 649 28.5
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 3.8e-46 190.3 649 28.5
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 1.1e-45 188.7 647 28.0
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 1.1e-45 188.7 651 27.0
TPR.G7490 Trifolium pratense HOM05D006530 ORTHO05D008283 3.2e-45 187.2 406 34.5
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 5.4e-45 186.4 695 27.6
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 1.6e-44 184.9 634 27.9
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 3.0e-43 180.6 784 27.3
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 3.9e-43 180.3 672 27.2
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 1.3e-41 175.3 640 27.7
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 3.1e-40 170.6 582 29.6
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 6.9e-40 169.5 656 30.0
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 5.8e-39 166.4 322 37.0
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 4.6e-36 156.8 775 24.9
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 6.0e-36 156.4 773 24.7
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 3.6e-33 147.1 520 30.6
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 3.1e-32 144.1 521 27.4
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 3.2e-29 134.0 428 29.2
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 1.4e-24 118.6 685 24.2
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 3.1e-24 117.5 523 26.8
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 1.3e-22 112.1 350 30.6
SEGI_11846 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 8.7e-19 99.4 130 41.5
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 3.3e-18 97.4 301 27.6
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 5.7e-18 96.7 170 36.5
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 2.6e-15 87.8 725 23.2
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.8e-14 84.0 80 51.2
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 5.0e-14 83.6 76 53.9
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 5.0e-14 83.6 76 53.9
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.5e-13 81.3 76 52.6
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 1.3e-11 75.5 83 43.4
SGA_v2.0_scaffold112G31585 Striga asiatica HOM05D006530 ORTHO05D008283 4.3e-10 70.5 54 55.6
Mapoly0071s0087 Marchantia polymorpha HOM05D006530 ORTHO05D008283 2.9e-06 57.8 174 31.0


User provided reference genes

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