Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 0.0e+00 1461.8 757 100.0
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 0.0e+00 1356.7 776 91.5
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 0.0e+00 1262.7 761 86.1
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.6e-293 1011.9 572 91.8
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.6e-285 985.3 768 67.8
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.2e-278 961.1 752 66.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 5.7e-277 957.6 744 67.9
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.3e-276 956.4 766 65.3
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.8e-276 955.3 759 66.5
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.0e-273 946.8 752 65.3
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.2e-272 941.8 776 63.8
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.1e-271 939.1 759 65.0
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.3e-270 935.6 760 63.4
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-269 933.3 765 64.2
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.5e-269 932.9 776 63.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.4e-269 931.8 756 64.8
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.4e-267 926.4 756 64.9
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.8e-267 926.0 761 63.9
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 9.1e-267 923.7 759 63.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 2.7e-266 922.2 758 63.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.3e-265 919.8 758 63.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.2e-265 919.1 756 64.3
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.5e-264 916.4 759 63.8
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 2.1e-263 912.5 759 63.2
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.7e-263 911.4 757 63.9
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 9.8e-261 903.7 758 63.1
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.7e-260 902.9 762 61.7
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 6.3e-260 901.0 762 62.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 3.8e-257 891.7 720 65.4
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 3.0e-254 882.1 760 60.1
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.2e-253 880.2 760 62.0
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.4e-251 872.5 760 59.3
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.4e-251 871.3 763 60.9
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.2e-250 870.2 768 60.2
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 7.8e-250 867.5 706 64.4
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 8.6e-249 864.0 760 59.1
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.3e-248 862.1 766 59.8
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.3e-244 850.1 734 62.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.2e-244 849.4 784 58.5
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 6.0e-242 841.3 759 60.6
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.1e-240 837.0 759 57.3
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 9.5e-240 833.9 761 57.8
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 2.1e-239 832.8 760 57.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 2.1e-239 832.8 763 57.7
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.1e-239 832.8 760 57.1
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.4e-238 830.1 803 56.3
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 5.2e-238 828.2 762 57.5
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 5.8e-237 824.7 758 57.1
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 7.5e-237 824.3 751 57.7
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 7.5e-237 824.3 758 57.5
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 9.9e-237 823.9 784 56.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.3e-236 823.5 761 57.3
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.3e-236 823.5 762 57.2
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.9e-235 819.7 762 57.2
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 2.4e-235 819.3 762 57.5
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.1e-234 816.2 736 58.7
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 7.8e-234 814.3 761 56.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.0e-233 813.9 785 56.1
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.3e-233 813.5 769 56.0
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.5e-232 810.1 683 63.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 9.5e-232 807.4 762 57.5
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.2e-231 807.0 759 55.6
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.3e-230 802.7 759 56.1
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 7.6e-229 797.7 777 55.1
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.2e-228 796.2 761 55.7
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.4e-227 793.5 768 54.9
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.4e-227 792.7 778 54.8
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 7.8e-226 787.7 761 54.4
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 9.6e-224 780.8 762 54.1
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.2e-223 780.4 771 53.8
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.8e-223 779.2 783 53.4
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 6.2e-223 778.1 764 55.9
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 8.1e-223 777.7 762 56.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.4e-222 776.2 760 56.4
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 7.1e-219 764.6 763 52.7
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.7e-217 760.0 719 56.6
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 3.0e-217 759.2 760 54.6
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 2.5e-216 756.1 760 55.9
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 3.3e-216 755.7 573 69.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.2e-215 751.5 709 57.1
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 4.5e-213 745.3 800 50.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.2e-211 738.8 575 66.4
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 5.4e-211 738.4 730 55.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 6.7e-209 731.5 761 52.4
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 4.2e-203 712.2 565 66.2
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 7.1e-203 711.4 759 50.9
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 7.1e-203 711.4 733 55.9
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.6e-202 710.3 763 50.2
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.4e-198 697.2 712 54.5
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-198 696.8 580 63.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 9.0e-198 694.5 564 65.6
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.6e-197 693.0 564 65.6
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 3.4e-197 692.6 564 66.1
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.0e-196 691.0 760 50.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 7.1e-195 684.9 752 51.1
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.9e-193 679.1 765 48.5
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 5.0e-188 662.1 636 56.6
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.2e-186 657.5 653 53.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 5.1e-185 652.1 574 59.9
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.1e-184 651.0 512 67.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 6.3e-183 645.2 748 48.4
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.8e-180 636.0 760 48.6
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.2e-171 606.3 530 60.9
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 8.5e-164 581.6 527 61.3
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.5e-163 580.1 455 66.6
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 2.2e-159 567.0 762 44.2
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.7e-154 550.1 505 55.8
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.3e-145 520.4 635 45.7
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-144 517.7 529 51.8
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 2.0e-144 517.3 780 38.3
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.6e-125 453.0 489 52.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 7.8e-125 452.2 434 54.1
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.3e-123 446.8 333 69.7
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 3.7e-119 433.3 535 49.0
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 9.9e-112 408.7 326 66.6
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 4.4e-104 383.3 821 31.3
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.7e-103 381.3 280 70.7
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 3.1e-97 360.5 287 65.2
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 4.0e-97 360.1 478 46.2
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 9.9e-96 355.5 387 52.7
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 4.6e-85 320.1 279 62.4
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.5e-83 314.3 283 58.3
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 3.3e-83 313.9 230 70.9
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 9.6e-83 312.4 738 29.9
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 3.1e-81 307.4 783 28.6
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 5.9e-72 276.6 345 40.6
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-67 262.3 176 74.4
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 7.4e-59 233.0 204 58.8
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.8e-58 231.1 222 54.1
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.3e-55 222.2 646 26.9
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 4.2e-54 217.2 191 56.0
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 3.6e-45 187.6 277 43.3
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.4e-43 180.6 416 33.2
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.8e-42 177.9 416 32.9
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.4e-41 174.9 242 43.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 5.0e-39 167.2 192 46.4
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-33 148.7 136 62.5
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 5.0e-23 114.0 81 71.6
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 1.5e-22 112.5 107 62.6
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.8e-21 108.2 80 71.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 6.8e-20 103.6 88 55.7
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.4e-19 101.3 245 33.5
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-17 96.3 76 60.5
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 5.0e-15 87.4 112 43.8
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 8.6e-15 86.7 146 37.0
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-13 82.4 68 57.4
MELO3C034510.2 Cucumis melo HOM05D017495 ORTHO05D167753 1.4e-12 79.3 48 79.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 6.8e-12 77.0 87 40.2
MELO3C027756.2 Cucumis melo HOM05D017495 ORTHO05D168972 2.6e-11 75.1 46 78.3
MELO3C034872.2 Cucumis melo HOM05D017495 ORTHO05D169777 4.4e-11 74.3 46 78.3
MELO3C030829.2 Cucumis melo HOM05D017495 ORTHO05D000031 3.0e-07 61.6 33 87.9
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.5e-06 59.3 35 85.7
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 5.6e-06 57.4 110 36.4


User provided reference genes

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