Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 0.0e+00 1078.5 529 100.0
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 3.8e-171 605.5 539 63.1
Sed0026559 Sechium edule HOM05D006713 ORTHO05D008601 1.9e-122 443.7 277 80.5
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 3.3e-122 443.0 528 48.5
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 4.3e-122 442.6 499 49.9
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 2.1e-121 440.3 507 49.7
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 2.2e-118 430.3 543 47.5
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 2.2e-118 430.3 549 47.0
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 4.9e-118 429.1 554 45.7
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 1.4e-117 427.6 546 48.0
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 1.2e-116 424.5 545 47.5
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 6.0e-116 422.2 520 47.1
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 2.3e-115 420.2 527 47.2
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 5.1e-115 419.1 541 47.3
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 6.7e-115 418.7 491 48.1
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 8.7e-115 418.3 543 46.6
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 2.5e-114 416.8 548 46.9
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 3.3e-114 416.4 537 45.3
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 4.3e-114 416.0 535 46.5
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 9.6e-114 414.8 535 46.5
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 1.3e-113 414.5 535 46.4
MELO3C013617.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.8e-112 410.6 535 48.8
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.4e-112 410.2 543 46.4
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 3.1e-112 409.8 527 45.5
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 1.5e-111 407.5 531 46.5
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 5.8e-111 405.6 483 48.4
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 3.8e-110 402.9 515 45.4
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 8.4e-110 401.7 486 47.1
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 2.5e-109 400.2 488 47.1
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 9.3e-109 398.3 551 43.4
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 1.2e-108 397.9 524 45.6
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 1.6e-108 397.5 532 43.6
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 2.1e-108 397.1 559 42.9
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.7e-108 396.7 515 46.4
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 4.6e-108 396.0 525 45.1
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 6.7e-107 392.1 489 46.0
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 6.7e-107 392.1 493 44.6
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 6.7e-107 392.1 553 44.1
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 6.7e-107 392.1 492 44.7
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 8.7e-107 391.7 558 43.7
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 1.1e-106 391.3 545 45.0
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 2.5e-106 390.2 511 45.2
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 7.4e-106 388.7 533 43.3
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 1.6e-105 387.5 516 43.6
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 1.4e-104 384.4 538 42.8
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 5.3e-104 382.5 504 45.2
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 6.9e-104 382.1 483 45.5
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 2.0e-103 380.6 516 45.2
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 2.6e-103 380.2 514 44.2
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 4.5e-103 379.4 523 44.2
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 2.9e-102 376.7 525 43.0
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 2.9e-102 376.7 529 42.7
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 5.0e-102 375.9 518 43.6
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 1.9e-101 374.0 537 41.9
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 1.9e-101 374.0 511 43.8
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 4.2e-101 372.9 537 42.6
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 1.2e-100 371.3 498 43.6
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 1.6e-100 370.9 534 42.5
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 2.1e-100 370.5 533 43.2
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 4.6e-100 369.4 507 43.8
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 1.0e-99 368.2 492 43.5
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 1.4e-99 367.9 491 43.4
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 1.8e-99 367.5 566 40.8
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 5.1e-99 365.9 536 41.4
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 5.1e-99 365.9 536 41.4
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 5.1e-99 365.9 489 43.1
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 8.8e-99 365.2 508 42.9
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 1.5e-98 364.4 536 41.4
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 1.3e-97 361.3 492 42.7
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 1.3e-97 361.3 492 42.7
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 2.8e-97 360.1 491 42.6
CiPaw.03G176500 Carya illinoinensis HOM05D006713 ORTHO05D008601 2.8e-97 360.1 275 65.5
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 8.2e-97 358.6 492 42.9
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 5.3e-96 355.9 291 63.6
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 5.3e-96 355.9 520 43.1
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 8.5e-94 348.6 490 41.0
CSS0039998 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 2.1e-92 344.0 302 59.3
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 6.1e-92 342.4 543 41.3
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 1.0e-91 341.7 544 41.4
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 2.3e-91 340.5 484 42.6
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 4.8e-89 332.8 489 40.1
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 2.4e-88 330.5 484 39.3
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 7.0e-88 328.9 488 40.0
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 1.2e-87 328.2 487 39.8
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 6.5e-86 322.4 248 63.3
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 2.7e-84 317.0 215 72.1
Sopen07g028010 Solanum pennellii HOM05D006713 ORTHO05D008601 1.0e-83 315.1 245 61.6
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 1.4e-83 314.7 506 39.3
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 2.0e-82 310.8 525 38.7
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 2.2e-81 307.4 550 38.9
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 1.4e-80 304.7 477 39.6
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 1.4e-80 304.7 548 38.9
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 3.2e-77 293.5 511 39.5
Glyma.12G203966 Glycine max HOM05D006713 ORTHO05D008601 1.6e-76 291.2 165 78.2
Os06g0342750 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 6.3e-73 279.3 268 50.0
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 8.2e-73 278.9 428 40.2
SalBow1G6029 Salvia bowleyana HOM05D006713 ORTHO05D008601 1.2e-68 265.0 168 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 1.1e-56 225.3 479 31.5
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 1.8e-56 224.6 496 31.9
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 1.9e-48 198.0 560 29.3
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 4.1e-48 196.8 301 36.9
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 1.4e-40 171.8 447 32.0
MELO3C001128.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.5e-37 161.8 78 93.6
SalBow1G1793 Salvia bowleyana HOM05D006713 ORTHO05D008601 1.9e-37 161.4 142 54.2
Glyma.12G204032 Glycine max HOM05D006713 ORTHO05D008601 1.0e-30 139.0 97 72.2
MELO3C013610.2 Cucumis melo HOM05D006713 ORTHO05D008601 8.1e-28 129.4 75 92.0
MELO3C013612.2 Cucumis melo HOM05D006713 ORTHO05D008601 5.8e-26 123.2 68 86.8
Os06g0343000 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 8.4e-25 119.4 96 63.5
Oeu023431.1 Olea europaea HOM05D006713 ORTHO05D008601 9.6e-13 79.3 57 71.9
MELO3C035062.2 Cucumis melo HOM05D006713 ORTHO05D008601 3.6e-12 77.4 41 87.8
SEGI_39135 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 3.6e-12 77.4 95 45.3
Oeu045818.1 Olea europaea HOM05D006713 ORTHO05D008601 1.4e-11 75.5 90 51.1
SEGI_34366 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 4.6e-07 60.5 85 41.2
MELO3C031096.2 Cucumis melo HOM05D006713 ORTHO05D008601 2.3e-06 58.2 30 90.0
MELO3C028751.2 Cucumis melo HOM05D006713 ORTHO05D008601 3.9e-06 57.4 30 90.0


User provided reference genes

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