Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.8e-309 1065.1 528 100.0
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 5.9e-281 970.3 528 90.7
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 3.3e-279 964.5 528 90.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.3e-259 899.4 539 84.0
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 6.3e-190 667.9 525 64.2
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 7.0e-189 664.5 537 63.3
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 5.9e-188 661.4 530 63.4
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 5.0e-187 658.3 525 62.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.9e-186 656.4 532 64.3
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.9e-186 656.4 534 64.0
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.2e-186 655.6 525 63.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.2e-186 655.6 525 63.6
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 4.2e-186 655.2 537 64.2
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.0e-185 651.0 534 62.4
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.4e-184 650.2 525 62.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-183 646.7 525 63.2
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.5e-183 646.7 532 61.7
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.3e-183 645.6 527 63.6
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 7.5e-183 644.4 528 62.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.7e-183 644.0 522 62.8
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 5.0e-179 631.7 527 61.1
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 6.5e-179 631.3 547 61.1
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 6.5e-179 631.3 547 61.1
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.5e-178 628.2 537 60.7
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 8.8e-176 620.9 529 60.3
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.5e-175 620.2 524 61.1
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.0e-175 619.8 558 60.2
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.4e-173 613.6 521 59.9
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 9.1e-173 610.9 552 58.2
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 2.1e-169 599.7 545 58.9
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-168 597.0 555 57.3
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 6.8e-168 594.7 512 60.9
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 6.8e-168 594.7 528 58.5
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 8.9e-168 594.3 516 60.1
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 1.3e-166 590.5 522 57.3
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 6.3e-166 588.2 528 57.2
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 3.1e-165 585.9 530 57.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.5e-164 582.4 523 59.1
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 5.0e-163 578.6 523 58.7
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 5.6e-162 575.1 554 58.5
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.6e-161 572.4 479 61.0
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.7e-161 572.0 524 55.5
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.1e-157 560.8 528 55.5
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.6e-156 557.0 526 54.6
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 7.8e-156 554.7 528 54.4
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.2e-153 547.4 523 53.2
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.8e-153 546.2 530 54.0
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.6e-153 545.8 519 57.6
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 4.7e-153 545.4 524 53.8
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 5.2e-152 542.0 541 53.6
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 6.8e-152 541.6 525 53.9
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 6.8e-152 541.6 540 51.1
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.2e-151 540.8 528 53.8
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.4e-151 539.3 525 54.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.4e-151 539.3 544 52.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.4e-151 538.9 527 54.6
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.3e-150 537.3 542 53.9
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.7e-150 537.0 531 54.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 4.9e-150 535.4 525 52.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 7.0e-149 531.6 542 53.5
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 3.5e-148 529.3 527 52.9
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 8.6e-147 524.6 529 54.1
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 4.3e-146 522.3 528 51.5
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.1e-144 516.2 551 49.9
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 4.0e-144 515.8 525 51.8
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 6.8e-144 515.0 525 51.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 3.4e-143 512.7 525 53.1
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 7.5e-143 511.5 539 50.1
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.3e-142 510.8 529 52.9
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.4e-142 508.4 537 50.7
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-141 507.3 525 51.8
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.2e-141 506.1 528 51.7
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 5.4e-141 505.4 529 51.0
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 9.2e-141 504.6 529 50.9
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 2.7e-140 503.1 533 51.8
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 6.0e-140 501.9 524 51.5
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.0e-139 499.6 528 49.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.6e-137 493.8 531 50.5
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.8e-137 493.0 533 49.7
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 4.7e-137 492.3 524 52.3
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.1e-136 491.1 530 49.8
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.4e-136 490.7 528 49.1
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.4e-136 490.0 528 49.1
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.1e-136 489.6 529 49.0
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 5.2e-136 488.8 530 49.6
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.5e-135 487.3 529 50.1
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 7.6e-135 485.0 532 49.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.7e-134 483.8 511 50.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 5.4e-133 478.8 530 49.1
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.2e-132 477.6 521 50.9
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 6.0e-132 475.3 530 49.2
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-131 473.8 525 49.0
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 8.7e-131 471.5 510 49.0
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.3e-130 469.2 527 48.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 7.3e-130 468.4 528 47.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.1e-129 466.8 527 48.8
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.6e-129 466.1 532 48.1
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 4.7e-129 465.7 527 48.0
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 7.6e-127 458.4 556 46.8
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 7.6e-127 458.4 471 51.6
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.4e-125 454.1 530 46.4
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.3e-118 431.0 484 50.8
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.1e-116 423.7 533 43.7
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 7.9e-116 421.8 566 43.8
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.1e-113 411.8 513 44.4
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 6.9e-112 408.7 519 43.4
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 2.6e-111 406.8 540 42.4
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.4e-111 406.4 540 44.6
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 9.9e-111 404.8 536 44.8
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.4e-109 401.0 532 43.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.8e-107 394.0 525 45.1
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 7.4e-106 388.7 510 43.3
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 2.6e-103 380.2 408 51.0
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.2e-100 371.3 531 41.8
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.3e-99 367.9 533 41.1
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.8e-97 359.4 513 40.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 5.1e-91 339.3 563 38.9
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.5e-90 337.8 534 39.0
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 4.3e-90 336.3 472 43.9
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-84 315.5 522 37.4
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.3e-81 305.8 522 37.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-77 295.0 529 35.9
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.4e-74 282.3 477 37.5
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.8e-73 279.6 512 34.8
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.8e-73 279.6 477 37.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.6e-60 238.0 530 30.9
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-54 217.6 476 33.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-54 217.6 476 33.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.5e-53 212.2 388 37.1
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.7e-50 203.0 141 68.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 5.7e-50 203.0 288 43.1
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.5e-47 193.4 143 68.5
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.9e-45 188.0 314 38.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.3e-45 186.8 172 57.0
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.0e-39 166.4 501 26.9
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 7.3e-37 159.5 485 29.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 4.0e-35 153.7 511 28.0
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.2e-32 144.1 434 29.3
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.0e-31 139.8 504 26.4
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 3.3e-29 134.0 465 26.9
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 2.4e-24 117.9 512 24.4
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.1e-19 102.4 459 23.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 8.9e-19 99.4 98 55.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.4e-18 97.1 65 69.2
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.6e-15 88.6 198 33.8
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.7e-15 87.8 55 74.5
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-14 85.9 302 28.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.0e-14 84.3 393 23.9
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 3.9e-14 84.0 119 38.7
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.6e-12 78.6 110 37.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.6e-12 78.6 53 60.4
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-12 78.2 82 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.8e-12 77.8 127 33.9
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.8e-11 75.1 111 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.4e-08 64.7 61 41.0


User provided reference genes

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