Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.4e-76 288.9 162 100.0
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.3e-57 224.9 166 81.3
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 4.1e-47 191.8 165 68.5
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.2e-22 110.5 135 52.6
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.6e-22 110.2 148 50.7
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.6e-22 110.2 148 50.7
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 2.0e-22 109.8 161 51.6
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.3e-21 107.1 138 52.2
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.7e-21 106.7 162 46.9
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 2.9e-21 105.9 139 50.4
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-20 103.6 139 48.9
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.2e-20 102.1 135 48.9
CsaV3_2G003540 Cucumis sativus L. HOM05D003969 ORTHO05D003125 5.5e-20 101.7 99 75.8
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.7e-19 99.4 135 48.1
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.4e-18 97.1 134 49.3
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.8e-18 94.7 134 51.5
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.8e-18 94.7 134 51.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.5e-17 91.3 154 46.8
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.2e-16 89.7 131 44.3
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 4.8e-16 88.6 137 43.1
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 1.4e-15 87.0 151 43.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.4e-15 87.0 167 40.7
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 2.4e-15 86.3 165 42.4
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 9.1e-15 84.3 154 39.6
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 9.1e-15 84.3 167 40.1
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.2e-14 84.0 168 40.5
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.6e-14 83.6 133 43.6
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.6e-14 83.6 133 43.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.6e-14 83.6 148 42.6
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.7e-14 82.8 141 46.8
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 3.5e-14 82.4 149 42.3
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 3.5e-14 82.4 182 39.0
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.5e-14 82.0 149 41.6
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 4.5e-14 82.0 145 44.1
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.9e-14 81.6 94 54.3
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 5.9e-14 81.6 152 40.1
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 1.3e-13 80.5 153 39.9
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.3e-13 80.5 143 45.5
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 5.0e-13 78.6 147 38.1
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 5.0e-13 78.6 132 44.7
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.1e-12 77.4 81 56.8
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.5e-12 77.0 150 40.7
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.5e-12 76.3 164 38.4
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 2.5e-12 76.3 106 47.2
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 2.5e-12 76.3 133 39.1
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.2e-12 75.9 144 36.8
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 5.5e-12 75.1 112 41.1
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 5.5e-12 75.1 146 36.3
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.5e-12 75.1 153 39.9
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 5.5e-12 75.1 151 39.1
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.2e-12 74.7 164 37.8
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.2e-12 74.7 166 41.0
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 9.5e-12 74.3 164 37.8
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 9.5e-12 74.3 172 41.3
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 2.7e-11 72.8 149 34.2
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 2.7e-11 72.8 149 45.0
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.7e-11 72.8 100 50.0
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 2.7e-11 72.8 170 37.6
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 3.6e-11 72.4 151 39.1
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.6e-11 72.4 148 37.8
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.7e-11 72.0 144 35.4
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.1e-11 71.6 94 52.1
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 6.1e-11 71.6 149 38.9
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 8.0e-11 71.2 188 44.7
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 8.0e-11 71.2 170 47.1
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 8.0e-11 71.2 136 41.9
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.0e-10 70.9 143 48.3
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 1.0e-10 70.9 143 41.3
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.0e-10 70.9 145 35.2
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.4e-10 70.5 69 58.0
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 1.4e-10 70.5 147 37.4
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.4e-10 70.5 100 48.0
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.8e-10 70.1 147 38.1
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.8e-10 70.1 89 51.7
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.8e-10 70.1 143 35.7
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.8e-10 70.1 140 38.6
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 2.3e-10 69.7 137 45.3
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.0e-10 69.3 130 40.0
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 3.0e-10 69.3 144 38.9
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.0e-10 69.3 72 50.0
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 3.0e-10 69.3 93 48.4
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.0e-10 68.9 148 35.1
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 4.0e-10 68.9 141 39.0
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.2e-10 68.6 134 39.6
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 8.8e-10 67.8 145 37.9
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.8e-10 67.8 76 48.7
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.8e-10 67.8 76 48.7
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 1.2e-09 67.4 131 37.4
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 1.2e-09 67.4 152 38.2
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.2e-09 67.4 172 39.5
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 1.5e-09 67.0 170 38.8
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.5e-09 67.0 82 52.4
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 1.5e-09 67.0 138 38.4
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 2.0e-09 66.6 145 37.9
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.0e-09 66.6 76 47.4
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.0e-09 66.6 139 36.0
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.6e-09 66.2 148 39.2
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.6e-09 66.2 115 40.0
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.4e-09 65.9 66 59.1
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 4.4e-09 65.5 138 38.4
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 7.5e-09 64.7 148 33.1
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.5e-09 64.7 144 36.1
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 9.8e-09 64.3 132 42.4
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 1.3e-08 63.9 146 37.7
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.3e-08 63.9 95 44.2
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.3e-08 63.9 93 44.1
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.3e-08 63.9 145 38.6
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.3e-08 63.9 88 46.6
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.7e-08 63.5 74 55.4
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 1.7e-08 63.5 64 56.2
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 2.8e-08 62.8 145 34.5
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 2.8e-08 62.8 101 47.5
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 3.7e-08 62.4 150 38.7
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 3.7e-08 62.4 140 40.0
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.3e-08 61.6 101 45.5
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 6.3e-08 61.6 136 35.3
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 6.3e-08 61.6 143 37.8
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 8.3e-08 61.2 148 38.5
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 8.3e-08 61.2 112 43.8
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 8.3e-08 61.2 60 53.3
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.1e-07 60.8 57 57.9
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.1e-07 60.8 93 51.6
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.1e-07 60.8 89 46.1
Potri.018G114401 Populus trichocarpa HOM05D058315 ORTHO05D050431 1.1e-07 60.8 144 38.2
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.1e-07 60.8 94 47.9
Rhsim01G0052500 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.4e-07 60.5 65 50.8
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-07 60.1 68 51.5
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.4e-07 59.7 149 38.9
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.4e-07 59.7 139 36.7
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.4e-07 59.7 150 37.3
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 3.1e-07 59.3 136 37.5
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.1e-07 59.3 56 60.7
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 4.1e-07 58.9 73 45.2
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 5.4e-07 58.5 127 34.6
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 5.4e-07 58.5 151 35.1
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 5.4e-07 58.5 85 45.9
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 7.0e-07 58.2 73 45.2
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 7.0e-07 58.2 84 47.6
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 7.0e-07 58.2 84 47.6
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 7.0e-07 58.2 84 47.6
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 7.0e-07 58.2 74 51.4
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 9.2e-07 57.8 93 49.5
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 9.2e-07 57.8 84 47.6
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 9.2e-07 57.8 84 46.4
Rhsim01G0052600 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.2e-06 57.4 58 53.4
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 1.2e-06 57.4 99 43.4
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.6e-06 57.0 94 50.0
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.6e-06 57.0 139 35.3
THA.LOC104802406 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 1.6e-06 57.0 80 45.0
CDE02G0310 Ceratophyllum demersum HOM05D003969 ORTHO05D003125 2.0e-06 56.6 72 47.2
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 2.7e-06 56.2 146 35.6
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 2.7e-06 56.2 67 52.2
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 3.5e-06 55.8 60 53.3
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 3.5e-06 55.8 60 53.3
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 3.5e-06 55.8 147 34.7
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.5e-06 55.8 45 62.2
Sp6g29150 Schrenkiella parvula HOM05D001431 ORTHO05D001268 4.5e-06 55.5 66 48.5
A02p02760 Brassica napus HOM05D000154 ORTHO05D000893 5.9e-06 55.1 74 44.6
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 5.9e-06 55.1 143 35.0
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 5.9e-06 55.1 91 39.6
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.7e-06 54.7 113 39.8
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.7e-06 54.7 64 45.3
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 7.7e-06 54.7 145 34.5
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 7.7e-06 54.7 66 48.5


User provided reference genes

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