Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 4.2e-178 627.9 310 100.0
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 2.4e-141 505.8 319 79.9
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 7.8e-132 474.2 312 77.2
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 4.0e-67 259.2 327 44.3
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 9.8e-66 254.6 297 47.1
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 8.3e-65 251.5 310 43.9
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 1.1e-64 251.1 329 42.9
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 1.2e-63 247.7 319 43.3
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 5.0e-62 242.3 302 43.4
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 1.1e-61 241.1 308 44.8
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 2.5e-61 240.0 266 48.5
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 4.2e-61 239.2 302 43.0
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 7.2e-61 238.4 301 43.9
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 4.7e-60 235.7 273 47.6
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 8.0e-60 235.0 313 42.8
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 5.2e-59 232.3 321 41.4
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 2.6e-58 229.9 305 42.6
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 4.1e-56 222.6 314 41.4
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 7.8e-55 218.4 310 40.3
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 1.2e-52 211.1 311 39.9
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 2.1e-52 210.3 314 38.5
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 4.7e-52 209.1 311 39.5
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 6.1e-52 208.8 317 39.4
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 1.8e-51 207.2 312 39.7
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 3.0e-51 206.5 315 39.7
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 4.0e-51 206.1 316 37.0
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 6.8e-51 205.3 315 38.1
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 8.9e-51 204.9 308 39.0
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 2.9e-49 199.9 277 40.4
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 2.9e-49 199.9 208 47.6
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 8.3e-49 198.4 314 37.9
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 1.4e-48 197.6 324 38.3
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 3.2e-48 196.4 272 41.9
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 2.0e-47 193.7 320 37.2
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.0e-47 193.7 314 36.6
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 2.0e-47 193.7 277 41.9
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 1.0e-46 191.4 274 42.0
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 3.9e-46 189.5 313 36.7
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 6.6e-46 188.7 263 40.7
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 1.5e-45 187.6 311 37.3
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 3.3e-45 186.4 305 37.7
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 7.3e-45 185.3 313 37.7
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 1.2e-44 184.5 316 36.4
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 1.1e-43 181.4 315 37.5
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 3.1e-43 179.9 321 36.8
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 2.0e-42 177.2 304 34.5
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 2.2e-41 173.7 313 34.5
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 2.9e-41 173.3 312 34.0
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 2.9e-41 173.3 276 36.2
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 1.1e-40 171.4 309 34.3
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 4.1e-40 169.5 315 35.9
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 1.2e-39 167.9 382 29.8
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 3.5e-39 166.4 246 36.2
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 1.3e-38 164.5 312 32.4
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 1.3e-38 164.5 312 32.4
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 1.3e-38 164.5 312 32.4
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 2.3e-38 163.7 244 38.5
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 3.9e-38 162.9 311 34.4
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 3.9e-38 162.9 313 34.2
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 6.6e-38 162.2 312 32.4
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 1.1e-37 161.4 299 34.8
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 1.5e-37 161.0 312 32.1
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 1.4e-35 154.5 315 34.6
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.3e-35 153.7 259 35.5
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 4.0e-35 152.9 210 40.0
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 5.2e-35 152.5 304 35.2
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 7.5e-34 148.7 181 46.4
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 2.9e-33 146.7 183 44.8
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 6.4e-33 145.6 166 45.2
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 2.7e-31 140.2 299 31.8
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 6.0e-31 139.0 225 39.1
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 5.1e-30 136.0 313 31.6
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 1.2e-28 131.3 202 40.1
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 1.4e-27 127.9 172 40.1
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 4.0e-27 126.3 175 42.3
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 2.6e-26 123.6 303 30.4
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 1.3e-25 121.3 257 35.8
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 2.4e-16 90.5 270 28.5
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 7.8e-15 85.5 120 39.2
Nitab4.5_0000525g0300 Nicotiana tabacum HOM05D003067 ORTHO05D009378 1.9e-13 80.9 207 29.5
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 9.6e-13 78.6 67 50.7
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 2.8e-12 77.0 91 44.0
Nitab4.5_0001478g0160 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.0e-10 70.9 183 29.0
AL2G22600 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 2.6e-10 70.5 101 37.6
AL6G46700 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 7.6e-10 68.9 101 37.6
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.1e-08 65.1 59 54.2
SGA_v2.0_scaffold113G31772 Striga asiatica HOM05D003067 ORTHO05D009378 7.9e-07 58.9 158 28.5
Nitab4.5_0008862g0010 Nicotiana tabacum HOM05D003067 ORTHO05D009378 1.8e-06 57.8 62 40.3


User provided reference genes

Program Settings