Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 1.4e-90 336.3 171 100.0
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.9e-31 139.8 122 70.5
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 5.3e-29 131.7 118 64.4
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 3.4e-28 129.0 118 62.7
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 1.0e-19 100.9 115 48.7
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 1.3e-19 100.5 118 50.0
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 3.8e-19 99.0 115 48.7
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 3.8e-19 99.0 115 48.7
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 6.5e-19 98.2 115 47.8
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 8.4e-19 97.8 118 45.8
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 1.4e-18 97.1 118 44.9
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.9e-18 96.7 118 48.3
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 7.1e-18 94.7 58 75.9
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 7.1e-18 94.7 58 75.9
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 7.1e-18 94.7 58 75.9
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 9.3e-18 94.4 111 44.1
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 1.6e-17 93.6 58 74.1
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 2.1e-17 93.2 58 74.1
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 2.1e-17 93.2 118 44.9
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 2.1e-17 93.2 115 47.0
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 2.1e-17 93.2 116 48.3
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 2.7e-17 92.8 58 74.1
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 2.7e-17 92.8 58 74.1
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 2.7e-17 92.8 58 74.1
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 2.7e-17 92.8 58 74.1
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 2.7e-17 92.8 58 74.1
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 2.7e-17 92.8 56 75.0
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 2.7e-17 92.8 111 45.9
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 2.7e-17 92.8 58 72.4
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 2.7e-17 92.8 118 45.8
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 2.7e-17 92.8 115 45.2
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 3.5e-17 92.4 115 47.0
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 3.5e-17 92.4 115 45.2
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 3.5e-17 92.4 111 44.1
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 4.6e-17 92.0 114 43.0
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 7.9e-17 91.3 118 43.2
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 7.9e-17 91.3 68 63.2
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.0e-16 90.9 110 46.4
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.0e-16 90.9 111 46.8
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.0e-16 90.9 56 73.2
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 1.3e-16 90.5 56 75.0
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.3e-16 90.5 58 69.0
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 2.3e-16 89.7 116 44.8
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 2.3e-16 89.7 116 44.8
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 2.3e-16 89.7 116 44.8
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 2.3e-16 89.7 116 44.8
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 2.3e-16 89.7 118 44.9
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 2.3e-16 89.7 58 70.7
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 2.3e-16 89.7 58 69.0
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 2.3e-16 89.7 58 70.7
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 2.3e-16 89.7 56 73.2
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 3.0e-16 89.4 118 46.6
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 3.9e-16 89.0 58 69.0
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 3.9e-16 89.0 115 46.1
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 5.1e-16 88.6 113 43.4
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 5.1e-16 88.6 58 70.7
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 5.1e-16 88.6 58 67.2
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 6.7e-16 88.2 55 69.1
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 6.7e-16 88.2 56 71.4
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 6.7e-16 88.2 116 45.7
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 8.7e-16 87.8 117 45.3
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 8.7e-16 87.8 117 45.3
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 8.7e-16 87.8 56 67.9
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 8.7e-16 87.8 56 67.9
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 8.7e-16 87.8 56 67.9
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 8.7e-16 87.8 56 67.9
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 8.7e-16 87.8 56 67.9
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 8.7e-16 87.8 56 67.9
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 1.1e-15 87.4 56 69.6
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 1.1e-15 87.4 55 69.1
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 1.5e-15 87.0 118 44.9
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.5e-15 87.0 60 65.0
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 1.9e-15 86.7 62 69.4
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 1.9e-15 86.7 111 44.1
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 1.9e-15 86.7 69 59.4
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 1.9e-15 86.7 111 44.1
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 2.5e-15 86.3 123 43.1
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 4.3e-15 85.5 60 66.7
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 4.3e-15 85.5 116 44.8
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 4.3e-15 85.5 116 44.8
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 5.7e-15 85.1 56 64.3
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 5.7e-15 85.1 55 67.3
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 7.4e-15 84.7 55 70.9
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 7.4e-15 84.7 112 42.9
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 7.4e-15 84.7 99 47.5
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 7.4e-15 84.7 115 41.7
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 9.6e-15 84.3 62 67.7
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 9.6e-15 84.3 60 66.7
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 9.6e-15 84.3 60 66.7
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 9.6e-15 84.3 116 43.1
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 1.3e-14 84.0 55 67.3
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 1.3e-14 84.0 55 65.5
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 1.6e-14 83.6 69 60.9
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 1.6e-14 83.6 58 62.1
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 2.1e-14 83.2 114 42.1
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 2.8e-14 82.8 97 45.4
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 3.7e-14 82.4 116 43.1
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 4.8e-14 82.0 113 41.6
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 6.2e-14 81.6 62 64.5
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 6.2e-14 81.6 56 66.1
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 1.1e-13 80.9 58 62.1
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 1.1e-13 80.9 58 62.1
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.4e-13 80.5 63 58.7
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.8e-13 80.1 57 64.9
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 9.0e-13 77.8 118 39.8
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 2.0e-12 76.6 118 37.3
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 2.6e-12 76.3 111 41.4
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 2.6e-12 76.3 49 67.3
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 7.1e-10 68.2 58 55.2
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 9.3e-10 67.8 41 70.7
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 2.1e-09 66.6 59 57.6
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 3.5e-09 65.9 60 53.3
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 1.0e-08 64.3 97 38.1
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 1.8e-08 63.5 58 44.8
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 3.0e-08 62.8 58 46.6
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 1.5e-07 60.5 58 56.9
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 2.8e-06 56.2 35 77.1
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 2.8e-06 56.2 60 53.3
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 6.3e-06 55.1 40 62.5
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 8.2e-06 54.7 40 62.5
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 8.2e-06 54.7 40 62.5


User provided reference genes

Program Settings