Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 3.5e-169 598.2 303 100.0
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.4e-165 586.3 304 98.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 4.0e-165 584.7 304 97.7
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.4e-156 555.1 303 93.4
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 5.5e-154 547.7 303 91.7
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.0e-144 516.9 300 83.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.3e-144 516.5 300 85.0
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.3e-144 516.5 300 84.3
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 8.7e-144 513.8 301 82.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.9e-143 512.7 301 84.1
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 2.5e-143 512.3 300 83.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 2.5e-143 512.3 301 84.7
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 5.7e-143 511.1 301 81.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 7.4e-143 510.8 301 83.7
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.1e-142 509.2 300 82.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 8.2e-142 507.3 300 82.0
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 8.2e-142 507.3 301 82.1
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.8e-141 506.1 300 81.7
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 4.1e-141 505.0 316 79.4
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 5.3e-141 504.6 301 82.1
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.9e-141 504.2 300 81.7
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 6.9e-141 504.2 300 81.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.2e-140 503.4 301 82.1
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.6e-140 502.3 300 81.3
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.6e-140 502.3 300 81.3
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 3.4e-140 501.9 300 81.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 5.9e-140 501.1 300 82.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.6e-140 500.7 300 81.0
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 7.6e-140 500.7 301 81.1
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 7.6e-140 500.7 301 82.1
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.9e-139 498.8 301 81.1
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 5.0e-139 498.0 300 80.7
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 6.5e-139 497.7 301 81.1
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.1e-138 496.9 301 80.4
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.1e-138 496.9 301 80.1
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.4e-138 496.5 300 80.0
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.9e-138 496.1 301 80.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 3.2e-138 495.4 301 80.1
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.2e-138 495.4 300 80.3
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 4.2e-138 495.0 301 80.1
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 5.5e-138 494.6 301 79.7
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 5.5e-138 494.6 301 80.4
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 7.2e-138 494.2 301 80.1
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 7.2e-138 494.2 300 80.0
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 9.3e-138 493.8 301 80.7
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 81.1
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.6e-137 493.0 301 79.7
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.6e-137 493.0 301 80.7
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.1e-137 492.7 301 79.4
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.1e-137 492.7 299 80.6
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 3.6e-137 491.9 301 80.1
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 3.6e-137 491.9 301 79.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.6e-137 491.5 301 81.1
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 7.9e-137 490.7 301 78.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.0e-136 490.3 301 79.4
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.8e-136 489.6 301 80.4
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.8e-136 489.6 296 80.7
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.0e-136 488.8 301 80.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 3.9e-136 488.4 301 79.7
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 5.1e-136 488.0 300 79.7
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 8.7e-136 487.3 301 78.4
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.1e-135 486.9 299 79.6
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.9e-135 486.1 301 77.7
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.9e-135 486.1 301 80.7
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.3e-134 483.4 301 77.1
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.7e-134 481.9 301 78.1
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 8.2e-134 480.7 300 78.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.1e-133 480.3 301 76.7
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.4e-133 479.2 301 78.1
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.1e-133 478.8 301 77.7
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 4.1e-133 478.4 302 77.2
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.5e-132 476.5 301 77.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.5e-132 476.5 301 78.7
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.6e-132 475.7 299 77.9
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.6e-132 475.7 303 77.6
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.4e-132 475.3 301 77.4
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.0e-131 473.8 340 70.9
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.2e-131 472.6 302 76.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.2e-131 472.6 303 76.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.9e-131 472.2 303 76.9
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 3.8e-131 471.9 301 77.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 77.0
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 77.0
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 1.1e-130 470.3 300 75.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.9e-130 469.5 303 75.2
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.9e-130 469.5 300 76.7
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.5e-130 469.2 302 76.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.5e-130 469.2 302 76.5
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.5e-130 469.2 293 78.5
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 75.9
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 4.2e-130 468.4 300 76.3
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 4.2e-130 468.4 303 75.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 76.6
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 5.5e-130 468.0 300 77.0
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 7.2e-130 467.6 303 74.9
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 7.2e-130 467.6 300 76.3
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-129 466.8 302 76.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 2.1e-129 466.1 303 75.9
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.8e-128 463.0 299 75.3
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 8.8e-128 460.7 303 75.6
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.5e-127 459.9 300 74.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.0e-127 459.5 306 74.2
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 4.4e-127 458.4 321 72.3
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.7e-126 456.4 301 75.4
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.2e-126 456.1 336 69.6
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.8e-126 455.7 303 73.9
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.8e-126 454.9 303 74.3
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 4.8e-126 454.9 303 73.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 8.2e-126 454.1 295 74.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 8.2e-126 454.1 302 74.5
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 3.1e-125 452.2 316 72.5
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 5.0e-123 444.9 259 83.4
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 6.5e-123 444.5 303 72.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 8.5e-123 444.1 299 72.6
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 6.7e-120 434.5 294 72.1
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 2.2e-118 429.5 299 68.9
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 5.3e-117 424.9 292 71.6
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.0e-115 420.6 288 71.2
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 8.5e-115 417.5 310 69.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.1e-114 417.2 241 83.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 1.1e-114 417.2 340 62.9
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 5.5e-114 414.8 249 80.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.4e-112 410.2 301 69.4
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 7.5e-111 404.4 300 68.7
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 2.3e-104 382.9 300 64.7
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 3.4e-103 379.0 299 62.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.4e-101 373.6 300 64.0
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.5e-99 364.8 300 64.7
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.0e-96 357.5 509 43.6
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 7.5e-95 351.3 289 58.5
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.8e-94 349.4 209 79.9
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.4e-93 346.3 209 78.5
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.6e-92 343.6 220 76.4
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.5e-92 342.0 200 83.0
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.0e-83 314.3 243 69.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 7.0e-77 291.6 303 50.8
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 9.2e-77 291.2 246 58.1
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.0e-75 286.2 243 62.6
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.1e-65 253.4 154 80.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.7e-54 217.2 298 42.6
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 9.3e-53 211.5 298 40.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.9e-46 189.1 173 54.9
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.2e-45 186.0 108 77.8
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 5.8e-39 165.6 196 51.0
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 7.6e-39 165.2 101 79.2
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.5e-34 150.2 84 84.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.5e-26 123.6 84 70.2
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 2.2e-25 120.6 83 73.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 4.5e-23 112.8 261 29.1
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.2e-21 106.7 87 63.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 5.5e-21 105.9 155 40.0
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 7.9e-20 102.1 161 40.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.5e-18 97.8 86 59.3
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 4.3e-18 96.3 70 67.1
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.7e-17 94.4 121 47.1
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.2e-15 88.2 63 65.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 6.1e-12 75.9 54 74.1
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 3.4e-07 60.1 46 60.9
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 3.4e-07 60.1 40 70.0


User provided reference genes

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