Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 2369.3 1202 100.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 2228.4 1202 94.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 2195.6 1202 93.8
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1943.7 1185 83.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1699.1 1209 71.6
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1685.2 1208 71.4
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1674.4 1210 70.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1672.1 1206 70.7
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1672.1 1208 71.4
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1664.0 1211 70.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1662.1 1208 70.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1660.2 1210 70.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1659.8 1208 70.3
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1659.4 1208 70.8
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1658.7 1208 70.1
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1658.7 1211 70.4
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1656.7 1209 70.4
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1651.3 1210 70.1
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1650.6 1212 70.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1642.1 1206 69.8
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1639.8 1206 69.7
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1636.7 1210 69.7
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1636.3 1208 69.9
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1635.9 1206 69.4
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1206 69.2
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1628.2 1206 69.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1628.2 1206 69.1
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1625.1 1216 68.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1624.0 1205 69.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1619.8 1209 68.4
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1608.6 1212 68.0
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1608.2 1209 67.7
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1595.5 1208 67.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1591.6 1206 68.0
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1589.3 1171 69.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1577.8 1213 67.4
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1207 67.1
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1208 67.7
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1574.7 1182 68.2
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1567.0 1185 68.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1565.4 1205 65.8
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1565.1 1206 67.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1214 66.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1553.1 1221 65.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1552.3 1165 67.6
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1546.9 1208 66.1
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1544.6 1208 65.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1543.5 1212 65.8
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1542.3 1209 65.6
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1206 65.5
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1541.2 1214 64.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1540.8 1214 64.6
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1531.9 1208 64.7
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1530.4 1210 65.8
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1530.4 1212 65.3
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1528.8 1210 65.7
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1526.9 1208 66.2
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1525.0 1214 64.6
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1209 63.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1515.4 1210 63.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1514.6 1210 65.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1513.4 1214 63.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1510.7 1214 63.3
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1510.0 1215 63.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1509.2 1215 63.4
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1504.6 1204 64.0
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1504.2 1207 63.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1503.8 1204 64.3
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1503.4 1205 63.7
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1503.4 1173 66.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1500.3 1207 64.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1496.1 1213 64.0
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1491.5 1207 63.1
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1481.1 1211 63.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1479.9 1191 63.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1475.3 1206 63.5
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1471.8 1206 64.4
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1468.4 1222 61.9
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1466.8 1210 62.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1464.9 1181 63.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1459.9 1192 63.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1459.1 1122 66.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1444.1 1206 62.9
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1441.4 1196 62.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1435.2 1208 60.4
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1424.5 1208 61.8
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1423.3 1206 61.3
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1421.4 1209 62.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1404.8 1269 59.3
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1375.9 1215 59.9
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1375.5 1143 62.2
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1324.7 1143 60.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1317.8 996 68.2
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1312.4 1293 56.0
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1304.3 1186 57.3
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1299.3 1217 58.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1293.1 1203 56.6
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1289.2 1021 64.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1282.7 1207 55.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1243.0 1225 54.0
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1170.2 1055 59.1
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1104.7 960 61.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1101.3 889 63.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.4e-308 1062.0 837 67.4
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 3.2e-306 1055.4 808 67.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.2e-281 973.8 1152 49.7
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.1e-266 924.1 1235 42.1
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.2e-262 909.8 1237 41.6
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.5e-258 897.1 1240 42.0
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 4.4e-247 859.0 1196 43.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.4e-237 825.5 1164 42.1
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 8.6e-235 818.1 1217 39.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.1e-233 813.5 1164 41.8
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-230 803.5 1172 42.3
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.9e-230 802.4 637 65.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.9e-210 737.3 1080 43.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.2e-207 728.0 800 49.9
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 5.8e-207 725.7 1217 36.4
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.2e-190 670.6 604 58.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-190 670.2 573 60.6
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.7e-187 658.7 634 54.4
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-175 621.3 542 59.2
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 7.2e-157 559.3 473 62.8
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.8e-145 520.0 419 64.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-142 510.8 489 53.8
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.8e-115 419.9 321 66.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.3e-102 379.0 297 65.7
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.7e-79 301.6 1357 23.4
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.3e-73 282.7 267 52.1
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.6e-71 275.8 211 67.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 5.6e-69 267.3 210 63.3
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.5e-66 259.2 187 71.1
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.9e-57 228.4 216 58.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.3e-52 213.0 435 33.1
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.6e-52 212.6 483 32.1
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 5.2e-38 164.5 108 74.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.9e-33 148.7 788 23.2
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.0e-22 112.1 95 60.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.8e-17 95.1 91 53.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.9e-16 92.8 86 58.1
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 3.6e-15 88.6 351 26.2
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.4e-14 86.7 63 69.8
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-13 83.2 79 55.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 7.5e-13 80.9 78 56.4
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.1e-11 77.0 50 76.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.1e-11 77.0 50 76.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-11 76.3 76 52.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 9.2e-11 73.9 76 50.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 2.0e-10 72.8 71 50.7
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.0e-10 72.8 66 60.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.3e-09 70.1 64 57.8
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.3e-09 70.1 82 50.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 3.8e-09 68.6 64 56.2
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 5.6e-08 64.7 318 23.3
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 6.1e-07 61.2 181 25.4
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 6.8e-06 57.8 46 52.2


User provided reference genes

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