Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 0.0e+00 1090.9 618 100.0
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 5.7e-243 844.3 623 79.5
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 4.3e-190 668.7 623 67.7
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 2.1e-184 649.8 623 62.8
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 7.4e-73 279.3 633 34.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.1e-71 275.4 602 34.4
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 2.6e-70 270.8 635 32.8
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 8.5e-53 212.6 627 30.9
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 8.5e-53 212.6 635 31.2
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.4e-52 211.8 595 31.1
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 9.7e-49 199.1 635 30.7
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-47 195.7 665 28.9
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.4e-47 195.3 639 28.5
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.3e-47 193.4 625 29.3
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 2.6e-46 191.0 623 27.9
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 6.5e-45 186.4 590 31.0
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 8.5e-45 186.0 639 28.3
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.6e-43 180.6 624 29.6
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 1.4e-42 178.7 646 29.1
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 2.3e-42 177.9 660 26.7
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 3.9e-42 177.2 631 28.1
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 3.3e-41 174.1 622 28.3
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 5.7e-41 173.3 625 28.6
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.3e-40 172.2 648 29.5
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 3.7e-40 170.6 624 28.7
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 7.0e-39 166.4 640 28.1
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 7.0e-39 166.4 597 27.3
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.6e-38 165.2 615 27.6
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.3e-37 162.2 594 28.3
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.3e-37 162.2 639 28.0
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 5.5e-36 156.8 665 26.8
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 5.5e-36 156.8 627 26.0
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 9.4e-36 156.0 665 26.6
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 2.7e-35 154.5 633 27.8
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 3.6e-35 154.1 622 27.3
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 4.7e-35 153.7 590 27.3
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 6.1e-35 153.3 634 27.1
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.4e-34 152.1 627 25.7
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 6.8e-34 149.8 594 26.6
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 6.8e-34 149.8 668 25.0
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 1.5e-33 148.7 341 35.8
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 1.5e-33 148.7 602 26.2
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 2.0e-33 148.3 633 27.5
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.6e-33 147.9 637 25.9
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 7.5e-33 146.4 749 24.3
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.2e-32 144.8 636 27.7
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.8e-32 144.4 639 26.8
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.7e-32 144.1 597 28.0
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 4.8e-32 143.7 757 25.9
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.1e-31 142.5 260 35.4
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.0e-31 139.8 629 27.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 3.5e-30 137.5 583 28.1
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 3.5e-30 137.5 640 28.1
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 2.9e-29 134.4 601 26.6
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 3.8e-29 134.0 668 25.4
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.1e-28 132.5 632 27.2
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.9e-28 131.7 579 26.6
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.1e-27 126.7 630 26.7
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 5.2e-26 123.6 757 22.7
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 6.8e-26 123.2 624 25.3
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 6.8e-26 123.2 624 25.3
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 8.8e-26 122.9 590 25.9
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 3.4e-25 120.9 634 26.0
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 4.4e-25 120.6 678 25.2
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 2.2e-24 118.2 635 25.2
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 6.3e-24 116.7 660 24.7
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.8e-23 115.2 665 23.9
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 2.4e-23 114.8 590 25.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.1e-23 114.4 589 25.3
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 5.4e-23 113.6 592 25.5
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.2e-22 112.5 554 24.0
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.5e-22 110.5 590 25.1
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 5.0e-21 107.1 580 25.3
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.6e-21 106.3 667 23.8
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.1e-20 105.9 576 24.8
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 4.2e-20 104.0 443 27.3
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.8e-19 101.3 640 23.1
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 2.8e-19 101.3 560 24.3
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 4.7e-19 100.5 626 23.8
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.8e-18 98.6 610 23.9
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 2.3e-18 98.2 224 32.6
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.0e-18 97.4 627 23.4
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 6.8e-18 96.7 611 25.9
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 5.7e-17 93.6 670 22.8
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.9e-16 91.3 209 30.6
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 4.9e-16 90.5 619 22.3
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.1e-15 89.4 632 25.0
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.8e-15 88.6 340 24.4
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.4e-15 88.2 313 27.5
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 3.2e-15 87.8 462 22.5
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 5.4e-15 87.0 204 33.8
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 5.4e-15 87.0 637 23.5
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 9.2e-15 86.3 651 24.4
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.6e-14 85.5 863 20.3
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 4.6e-14 84.0 387 25.8
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.0e-13 82.8 523 23.5
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.3e-13 82.4 597 23.6
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 3.9e-13 80.9 554 23.1
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 1.1e-12 79.3 647 21.5
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.5e-12 79.0 572 22.6
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 4.3e-12 77.4 375 25.3
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 4.3e-12 77.4 375 25.3
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 7.3e-12 76.6 247 30.0
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.8e-11 74.7 213 29.1
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 6.1e-11 73.6 151 33.1
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.0e-10 72.8 606 22.4
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 1.4e-10 72.4 281 26.3
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.8e-10 72.0 301 28.2
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 2.6e-09 68.2 626 23.0
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 2.6e-09 68.2 115 39.1
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 3.4e-09 67.8 251 26.7
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 4.4e-09 67.4 531 21.8
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 9.8e-09 66.2 642 23.7
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 9.8e-09 66.2 770 20.9
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 1.7e-08 65.5 315 26.3
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 2.2e-08 65.1 632 22.0
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 2.9e-08 64.7 177 33.3
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 4.9e-08 63.9 702 21.7
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 4.9e-08 63.9 132 33.3
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.4e-07 61.6 83 41.0
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.2e-07 61.2 129 37.2
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 4.1e-07 60.8 144 34.7
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.6e-06 58.9 94 37.2
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 4.6e-06 57.4 290 28.3
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 6.0e-06 57.0 268 27.2


User provided reference genes

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