Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 0.0e+00 1869.7 947 100.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 0.0e+00 1565.8 947 84.9
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 0.0e+00 1524.6 970 81.4
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 0.0e+00 1298.9 976 72.5
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 8.8e-150 535.4 1087 38.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 2.4e-147 527.3 1083 38.8
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.1e-142 509.6 1016 39.2
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.1e-141 508.4 1096 37.2
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 1.1e-141 508.4 1072 38.2
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 9.1e-139 498.8 1073 37.7
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 8.5e-137 492.3 1063 37.8
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 7.2e-136 489.2 1018 37.9
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.1e-135 487.6 1009 38.6
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.0e-134 483.8 1008 38.0
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.7e-132 478.0 1020 37.7
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 4.8e-132 476.5 915 39.1
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.9e-128 464.5 1015 36.3
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 2.7e-122 444.1 1027 35.6
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 5.0e-121 439.9 1009 35.8
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.1e-119 434.5 970 36.5
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 4.0e-118 430.3 1038 34.4
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.5e-117 428.3 1039 34.6
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.0e-117 427.9 1062 34.0
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 5.7e-117 426.4 1063 34.1
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 1.3e-116 425.2 1056 34.7
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 7.0e-115 419.5 1027 33.4
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 9.1e-115 419.1 1044 34.4
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.5e-114 417.2 1027 34.0
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 3.3e-112 410.6 1010 34.6
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 7.2e-112 409.5 1002 34.6
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.2e-111 408.7 1014 34.5
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 8.9e-110 402.5 1016 34.3
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 1.2e-109 402.1 1024 33.7
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 5.7e-109 399.8 997 34.4
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 9.8e-109 399.1 1016 34.4
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.2e-108 397.9 1047 33.0
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.8e-108 397.5 982 34.2
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.9e-108 396.7 1045 33.6
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 3.1e-107 394.0 969 34.3
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.2e-106 392.1 1011 33.2
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 2.5e-104 384.4 1011 33.5
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 6.8e-102 376.3 1038 32.8
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 8.9e-102 375.9 1026 33.4
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 9.8e-101 372.5 682 39.3
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 1.2e-98 365.5 1015 33.0
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 3.5e-98 364.0 1021 31.7
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 6.6e-97 359.8 1008 32.5
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 8.6e-97 359.4 1017 31.9
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.6e-95 355.1 1049 32.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.3e-94 351.3 1120 30.7
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 8.9e-94 349.4 1143 31.0
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.2e-90 339.0 1087 30.2
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.2e-90 339.0 1134 31.5
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 3.0e-89 334.3 1109 31.1
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 4.3e-88 330.5 1109 30.9
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 7.3e-88 329.7 956 32.3
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 9.5e-88 329.3 993 30.6
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.6e-87 328.6 1068 30.7
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.1e-86 325.9 1008 31.4
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.8e-86 325.1 965 33.0
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.5e-85 322.0 769 34.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.4e-85 320.9 1011 30.9
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 4.4e-85 320.5 966 30.7
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 5.8e-85 320.1 982 31.8
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 5.8e-85 320.1 1080 29.1
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 2.2e-84 318.2 1077 30.1
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 2.1e-82 311.6 1005 30.9
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 6.0e-82 310.1 1017 29.8
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 6.0e-82 310.1 639 35.2
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 7.8e-82 309.7 824 32.4
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 3.9e-81 307.4 977 30.3
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 2.8e-79 301.2 1195 27.6
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 4.0e-78 297.4 1069 29.9
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 5.8e-77 293.5 987 30.4
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 4.9e-76 290.4 1001 29.9
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.9e-75 288.5 981 29.8
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.2e-74 285.8 1013 30.2
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.5e-74 284.3 997 28.6
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 8.7e-73 279.6 1003 29.3
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.5e-72 278.9 646 33.3
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 3.3e-72 277.7 995 28.7
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 1.6e-71 275.4 1027 28.6
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 3.6e-71 274.2 971 30.0
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 6.2e-71 273.5 1005 29.1
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.4e-70 272.3 560 34.3
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 5.3e-70 270.4 1052 28.8
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.6e-69 268.1 502 37.6
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 4.4e-69 267.3 972 28.9
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 3.8e-68 264.2 995 28.2
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 2.4e-67 261.5 1143 27.8
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 3.2e-67 261.2 478 36.2
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.2e-66 259.2 1014 28.6
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 4.3e-64 250.8 1007 28.1
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 4.0e-62 244.2 667 30.6
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.3e-57 229.2 859 29.8
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 3.4e-53 214.5 368 38.3
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 5.8e-53 213.8 1177 24.6
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 1.7e-52 212.2 321 40.5
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.7e-52 212.2 1176 23.5
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.5e-50 204.5 372 35.5
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 1.8e-49 202.2 177 54.2
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.7e-42 178.3 548 29.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 3.0e-41 174.9 177 49.7
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 8.2e-39 166.8 709 31.2
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 4.8e-31 141.0 200 39.0
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 8.2e-31 140.2 218 38.1
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 2.2e-28 132.1 254 31.1
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 6.1e-26 124.0 558 26.5
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.4e-25 122.9 302 32.5
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.4e-22 112.8 201 39.3
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 2.6e-21 108.6 315 34.0
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 1.5e-19 102.8 797 23.7
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.1e-16 93.2 317 29.0
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 2.0e-16 92.4 185 34.1
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 8.2e-15 87.0 70 55.7
MELO3C031824.2 Cucumis melo HOM05D057089 ORTHO05D034916 1.6e-10 72.8 39 84.6
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.8e-09 69.3 396 26.8
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 2.0e-08 65.9 136 36.0
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.5e-08 63.9 120 36.7
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 1.4e-06 59.7 165 32.7
Lj9A29G6 Lonicera japonica HOM05D006048 ORTHO05D007642 1.8e-06 59.3 107 38.3


User provided reference genes

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