Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.3e-249 865.9 449 100.0
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 3.7e-231 804.7 457 93.0
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 3.7e-223 778.1 454 90.5
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 4.3e-179 631.7 457 71.8
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 2.1e-178 629.4 454 70.9
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.1e-178 629.4 451 73.6
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.0e-177 627.1 454 70.5
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 9.2e-174 614.0 455 71.9
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.6e-173 613.2 452 69.5
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.6e-173 613.2 457 72.0
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 3.5e-173 612.1 456 72.1
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.0e-172 610.5 454 71.6
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.1e-171 607.1 453 70.4
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 8.0e-170 600.9 450 69.3
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.2e-168 597.0 508 68.1
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 3.4e-168 595.5 452 68.1
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 4.4e-168 595.1 448 69.0
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 9.8e-168 594.0 455 68.6
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 3.7e-167 592.0 451 69.6
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 3.7e-167 592.0 427 71.4
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 4.1e-166 588.6 461 67.7
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.6e-165 586.6 491 64.2
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.0e-164 583.9 454 69.4
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 6.6e-164 581.3 449 69.3
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.1e-163 580.5 450 67.8
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 3.3e-163 578.9 453 68.7
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.7e-162 575.1 452 66.6
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 4.7e-162 575.1 454 66.7
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 1.5e-160 570.1 446 66.8
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 3.4e-160 568.9 455 66.6
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 9.9e-160 567.4 454 67.0
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 2.9e-159 565.8 455 67.0
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 8.3e-159 564.3 448 67.6
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 1.1e-158 563.9 453 64.7
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 7.1e-158 561.2 453 65.3
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 9.2e-158 560.8 454 63.7
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 1.2e-157 560.5 445 65.4
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.2e-157 560.5 452 64.6
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 2.1e-157 559.7 378 75.7
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 1.0e-156 557.4 455 66.4
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 1.3e-156 557.0 455 66.6
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.1e-155 553.9 454 63.7
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.6e-155 551.6 454 64.5
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 7.3e-155 551.2 473 61.1
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.6e-154 550.1 448 65.8
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.1e-154 549.7 460 67.4
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 3.6e-154 548.9 448 66.1
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 4.7e-154 548.5 462 65.2
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.8e-153 546.6 427 66.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 2.4e-153 546.2 457 65.9
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 3.1e-153 545.8 448 65.4
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.0e-153 545.4 478 61.1
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 6.8e-153 544.7 427 65.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.2e-152 543.9 455 62.6
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 2.0e-152 543.1 340 78.8
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 9.9e-152 540.8 451 64.5
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 2.9e-151 539.3 460 62.2
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 2.9e-151 539.3 448 64.3
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.8e-151 538.9 455 63.5
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 4.2e-150 535.4 454 65.2
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 4.2e-150 535.4 451 64.1
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 4.2e-150 535.4 456 63.2
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.6e-149 533.5 450 62.2
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.7e-149 532.7 451 62.1
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 4.6e-149 531.9 457 60.8
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.0e-148 530.8 448 65.2
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.3e-148 529.6 387 70.8
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 5.1e-148 528.5 387 70.5
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 8.7e-148 527.7 340 77.1
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.1e-147 527.3 455 65.1
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 3.3e-147 525.8 447 62.9
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 5.6e-147 525.0 450 60.7
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 2.8e-146 522.7 452 60.8
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 4.7e-146 521.9 453 61.1
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 4.7e-146 521.9 472 62.3
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 2.4e-145 519.6 340 76.2
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 6.9e-145 518.1 497 58.4
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 9.0e-145 517.7 418 65.8
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 4.2e-142 508.8 408 64.7
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 5.4e-142 508.4 469 58.8
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 9.3e-142 507.7 478 57.9
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 2.1e-141 506.5 462 60.8
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 3.0e-140 502.7 445 60.7
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 3.6e-138 495.7 467 58.7
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 4.8e-138 495.4 392 66.6
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.4e-137 493.8 455 60.7
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 5.8e-136 488.4 337 70.9
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.8e-136 488.4 454 60.4
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 2.9e-135 486.1 373 71.8
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.4e-134 483.8 337 72.7
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 8.4e-127 458.0 454 57.5
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.4e-126 457.2 455 56.9
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.6e-125 453.8 466 54.9
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 4.6e-125 452.2 291 77.7
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 7.6e-120 434.9 256 81.2
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 9.3e-118 427.9 399 58.9
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.6e-117 425.6 476 51.1
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.3e-116 423.3 377 59.9
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.5e-112 410.6 256 76.6
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 3.0e-108 396.4 381 54.9
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 6.7e-108 395.2 460 52.2
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.2e-106 390.2 254 74.4
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 9.1e-105 384.8 369 56.6
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.8e-103 379.4 354 63.6
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 2.0e-99 367.1 343 54.5
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 3.3e-99 366.3 376 53.7
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.2e-98 363.6 275 66.9
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.2e-98 363.6 363 51.0
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-97 360.5 409 52.6
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.2e-94 349.7 354 50.8
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 2.7e-93 346.7 243 70.0
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 6.7e-92 342.0 289 64.0
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 1.2e-85 321.2 439 43.5
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 1.7e-79 300.8 354 51.4
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-76 290.8 455 43.7
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.9e-70 270.8 391 44.2
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.8e-52 211.1 286 42.0
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.3e-52 210.7 162 63.6
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 3.4e-51 206.8 235 52.8
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.1e-44 185.3 195 56.9
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.8e-44 184.5 286 42.7
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 4.4e-35 153.3 133 66.2
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 1.1e-33 148.7 93 72.0
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 3.5e-32 143.7 367 30.0
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.6e-29 134.8 122 59.0
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.2e-27 128.6 134 55.2
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.9e-26 124.0 196 43.4
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 9.3e-25 119.0 223 33.2
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.1e-24 117.9 60 83.3
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.3e-22 109.4 126 46.8
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 4.0e-20 103.6 217 41.0
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 7.9e-16 89.4 74 63.5
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 6.7e-07 59.7 103 41.7


User provided reference genes

Program Settings