Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 9.8e-98 360.1 184 100.0
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.6e-60 235.3 156 73.1
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.9e-59 231.1 156 73.7
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.4e-58 228.4 156 72.4
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.9e-56 223.0 156 70.5
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 2.4e-56 222.6 155 69.0
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 2.7e-55 219.2 177 66.1
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.6e-44 183.3 139 66.9
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.2e-44 181.4 139 66.9
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 9.0e-43 177.6 138 65.9
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 2.2e-41 172.9 156 57.7
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.9e-41 171.8 125 64.8
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 1.9e-40 169.9 168 47.0
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 2.1e-39 166.4 181 44.2
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.0e-38 164.1 182 47.8
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 3.9e-38 162.2 164 48.8
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 1.1e-35 154.1 182 45.6
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 2.0e-34 149.8 182 45.6
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 5.8e-34 148.3 138 50.0
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 3.8e-33 145.6 183 44.3
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.0e-33 145.2 97 74.2
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 8.4e-33 144.4 181 43.6
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 1.1e-32 144.1 184 41.3
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 5.5e-32 141.7 163 46.0
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.2e-31 140.6 97 71.1
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 1.2e-31 140.6 153 45.8
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 1.0e-30 137.5 169 45.0
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 6.7e-30 134.8 129 51.2
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 8.7e-30 134.4 184 40.8
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 2.5e-29 132.9 177 40.7
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 4.3e-29 132.1 129 50.4
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 4.3e-29 132.1 167 41.3
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 5.7e-29 131.7 173 43.4
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 5.7e-29 131.7 151 42.4
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 4.8e-28 128.6 141 46.1
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 6.3e-28 128.3 159 39.6
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 8.2e-28 127.9 153 43.8
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 2.4e-27 126.3 159 39.6
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.4e-26 122.5 162 39.5
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 4.5e-26 122.1 164 40.9
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 7.7e-26 121.3 168 35.1
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 7.7e-26 121.3 168 35.1
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.0e-25 120.9 150 41.3
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 2.2e-25 119.8 181 38.1
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 8.5e-25 117.9 177 37.9
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 8.5e-25 117.9 177 37.9
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 9.4e-24 114.4 145 40.0
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 1.0e-22 110.9 157 38.2
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 1.3e-20 104.0 172 32.6
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 2.8e-20 102.8 96 50.0
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 1.5e-18 97.1 141 36.9
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.6e-18 96.3 169 38.5
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 6.5e-17 91.7 173 31.8
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 8.5e-17 91.3 163 30.1
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 1.1e-16 90.9 172 32.0
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 4.2e-16 89.0 169 30.2
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 7.2e-16 88.2 163 32.5
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 2.1e-15 86.7 166 33.7
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 6.1e-15 85.1 153 32.0
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 7.9e-15 84.7 173 30.1
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 1.8e-14 83.6 158 30.4
C05p07380 Brassica napus HOM05D009911 ORTHO05D009712 2.3e-14 83.2 173 29.5
Thhalv10009653m.g Eutrema salsugineum HOM05D009911 ORTHO05D009712 2.3e-14 83.2 156 32.1
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 3.0e-14 82.8 163 29.4
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 6.7e-14 81.6 167 28.1
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 8.8e-14 81.3 175 27.4
AT1G09370 Arabidopsis thaliana HOM05D009911 ORTHO05D009712 2.0e-13 80.1 173 28.3
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 2.0e-13 80.1 178 30.3
SGA_v2.0_scaffold74G24609 Striga asiatica HOM05D009933 ORTHO05D009712 5.7e-13 78.6 179 27.4
SalBow7G3223 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.3e-12 77.4 163 28.8
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.2e-12 76.6 86 38.4
SalBow7G3334 Salvia bowleyana HOM05D000059 ORTHO05D012084 2.2e-12 76.6 184 28.8
BraA06t23824Z Brassica rapa HOM05D009911 ORTHO05D009712 2.8e-12 76.3 173 27.7
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 3.7e-12 75.9 170 27.6
A06p06110 Brassica napus HOM05D009911 ORTHO05D009712 4.8e-12 75.5 173 27.2
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 4.8e-12 75.5 148 29.7
Sed0015156 Sechium edule HOM05D011459 ORTHO05D013640 8.2e-12 74.7 127 37.0
Sp5g12740 Schrenkiella parvula HOM05D009945 ORTHO05D012028 1.1e-11 74.3 164 31.1
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 1.4e-11 73.9 179 29.1
SalBow7G2832 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.8e-11 73.6 162 27.8
Carub.0001s0871 Capsella rubella HOM05D009911 ORTHO05D009712 2.4e-11 73.2 176 26.7
BcaB01g00725 Brassica carinata HOM05D009945 ORTHO05D012028 3.1e-11 72.8 161 30.4
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 3.1e-11 72.8 169 29.6
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 4.1e-11 72.4 175 29.1
A06p06100 Brassica napus HOM05D013394 ORTHO05D009712 5.3e-11 72.0 159 27.0
BolC8t50245H Brassica oleracea HOM05D009945 ORTHO05D012028 7.0e-11 71.6 161 30.4
C05p07340 Brassica napus HOM05D013394 ORTHO05D009712 9.1e-11 71.2 159 25.8
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 9.1e-11 71.2 160 27.5
Migut.I00636 Erythranthe guttata HOM05D009933 ORTHO05D012084 2.0e-10 70.1 182 26.9
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.0e-10 70.1 141 31.9
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 2.0e-10 70.1 134 28.4
BcaC07g39401 Brassica carinata HOM05D009945 ORTHO05D012028 2.6e-10 69.7 161 29.8
BcaC07g39575 Brassica carinata HOM05D009945 ORTHO05D012028 2.6e-10 69.7 161 29.8
C08p24330 Brassica napus HOM05D009945 ORTHO05D012028 2.6e-10 69.7 161 29.8
C08p26270 Brassica napus HOM05D009945 ORTHO05D012028 2.6e-10 69.7 161 29.8
BolC8t50051H Brassica oleracea HOM05D009945 ORTHO05D012028 2.6e-10 69.7 161 29.8
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 2.6e-10 69.7 106 36.8
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 2.6e-10 69.7 175 28.6
AT3G49330 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 3.5e-10 69.3 163 30.7
AL5G29080 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 4.5e-10 68.9 163 30.7
CARHR158270 Cardamine hirsuta HOM05D009945 ORTHO05D012028 4.5e-10 68.9 165 29.7
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 4.5e-10 68.9 170 29.4
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 4.5e-10 68.9 163 28.8
A06p18400 Brassica napus HOM05D009945 ORTHO05D012028 5.9e-10 68.6 161 29.2
BraA06t24921Z Brassica rapa HOM05D009945 ORTHO05D012028 5.9e-10 68.6 161 29.2
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 5.9e-10 68.6 185 27.0
unitig_60.g25616 Utricularia gibba HOM05D009933 ORTHO05D012084 7.7e-10 68.2 165 23.0
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 1.0e-09 67.8 176 27.8
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 1.0e-09 67.8 154 28.6
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 2.2e-09 66.6 165 26.1
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.2e-09 66.6 164 28.0
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 2.9e-09 66.2 156 28.2
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 3.8e-09 65.9 167 26.3
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 3.8e-09 65.9 170 24.7
Sed0004364 Sechium edule HOM05D011459 ORTHO05D013640 3.8e-09 65.9 175 28.0
PGSC0003DMG400037656 Solanum tuberosum HOM05D004113 ORTHO05D005233 3.8e-09 65.9 160 25.6
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.8e-09 65.9 165 26.1
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 6.5e-09 65.1 173 27.7
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 1.1e-08 64.3 141 29.8
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.1e-08 64.3 152 27.0
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.9e-08 63.5 162 25.9
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 2.5e-08 63.2 156 26.9
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.5e-08 63.2 168 26.2
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 2.5e-08 63.2 157 26.1
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 2.5e-08 63.2 176 26.7
BcaC05g24790 Brassica carinata HOM05D009911 ORTHO05D009712 3.2e-08 62.8 169 20.7
BolC5t29493H Brassica oleracea HOM05D009911 ORTHO05D009712 3.2e-08 62.8 169 20.7
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 3.2e-08 62.8 135 26.7
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.2e-08 62.8 148 31.8
Gohir.D07G134300 Gossypium hirsutum HOM05D008191 ORTHO05D010044 3.2e-08 62.8 125 27.2
Gorai.001G145900 Gossypium raimondii HOM05D008191 ORTHO05D010044 3.2e-08 62.8 125 27.2
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 3.2e-08 62.8 175 26.9
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 4.2e-08 62.4 164 26.2
Gohir.A07G130033 Gossypium hirsutum HOM05D008191 ORTHO05D010044 4.2e-08 62.4 125 27.2
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 5.5e-08 62.0 175 25.7
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 7.2e-08 61.6 161 24.2
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 9.4e-08 61.2 161 26.1
Gohir.A01G035300 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.2e-07 60.8 168 25.6
MBI18_g25092_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D005233 1.2e-07 60.8 152 25.7
Psat4g021720 Pisum sativum HOM05D001578 ORTHO05D001207 1.2e-07 60.8 159 25.8
Lj4g0021583 Lotus japonicus HOM05D001578 ORTHO05D001207 1.6e-07 60.5 179 28.5
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.1e-07 60.1 160 26.9
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.1e-07 60.1 183 29.0
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.1e-07 60.1 186 26.3
arahy.Tifrunner.gnm1.ann1.2R90TF Arachis hypogaea HOM05D000961 ORTHO05D001207 2.7e-07 59.7 156 26.9
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 4.7e-07 58.9 159 25.8
Gohir.D01G023568 Gossypium hirsutum HOM05D001578 ORTHO05D001207 6.1e-07 58.5 168 25.0
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 6.1e-07 58.5 176 25.6
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 8.0e-07 58.2 135 26.7
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 8.0e-07 58.2 145 26.2
Ciclev10010801m.g Citrus clementina HOM05D009438 ORTHO05D001819 1.0e-06 57.8 160 26.9
Sabra11G0112900 Salix brachista HOM05D000311 ORTHO05D000183 1.0e-06 57.8 55 38.2
A06p06120 Brassica napus HOM05D009911 ORTHO05D009712 1.4e-06 57.4 173 22.5
C05p07390 Brassica napus HOM05D009911 ORTHO05D009712 1.4e-06 57.4 173 22.5
BraA06t23825Z Brassica rapa HOM05D009911 ORTHO05D009712 1.4e-06 57.4 173 22.5
Ciclev10002621m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.4e-06 57.4 145 26.2
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 1.4e-06 57.4 168 25.6
BolC5t29496H Brassica oleracea HOM05D009911 ORTHO05D009712 1.8e-06 57.0 175 22.9
Migut.I00086 Erythranthe guttata HOM05D062370 ORTHO05D001819 1.8e-06 57.0 172 25.6
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 1.8e-06 57.0 138 23.9
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.3e-06 56.6 160 25.6
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.3e-06 56.6 160 26.2
Ciclev10004017m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.0e-06 56.2 168 24.4
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 3.0e-06 56.2 146 26.7
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 4.0e-06 55.8 178 24.2
Rhsim11G0009400 Rhododendron simsii HOM05D001445 ORTHO05D001261 5.2e-06 55.5 168 25.0
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 8.8e-06 54.7 173 22.5
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 8.8e-06 54.7 173 22.5
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 8.8e-06 54.7 150 23.3
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 8.8e-06 54.7 152 23.0


User provided reference genes

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