Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 1.4e-201 706.1 364 100.0
Sed0015156 Sechium edule HOM05D011459 ORTHO05D013640 3.1e-119 432.6 364 67.0
Sed0004364 Sechium edule HOM05D011459 ORTHO05D013640 6.7e-82 308.5 360 51.9
MELO3C031526.2 Cucumis melo HOM05D011459 ORTHO05D013640 6.9e-79 298.5 181 85.6
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 5.9e-78 295.4 183 83.6
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.0e-51 205.3 169 66.3
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 1.2e-35 154.8 156 49.4
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 6.8e-34 149.1 178 46.1
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 8.9e-34 148.7 163 46.6
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 2.4e-31 140.6 175 42.3
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 2.7e-30 137.1 158 45.6
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 2.7e-30 137.1 169 45.0
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.5e-30 136.7 150 49.3
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 1.1e-28 131.7 167 44.3
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.5e-28 130.6 150 45.3
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 3.3e-28 130.2 157 44.6
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.3e-28 129.8 150 45.3
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 5.6e-28 129.4 169 44.4
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.7e-27 126.3 150 44.0
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 6.8e-26 122.5 165 43.0
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.2e-25 121.7 169 42.0
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 5.8e-25 119.4 168 41.1
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 1.3e-24 118.2 149 47.0
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 2.2e-24 117.5 134 44.0
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 2.9e-24 117.1 169 41.4
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 1.1e-23 115.2 181 40.9
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 1.4e-23 114.8 149 46.3
Thecc.05G326500 Theobroma cacao HOM05D011459 ORTHO05D013640 3.2e-23 113.6 172 40.7
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 5.4e-23 112.8 161 44.7
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 7.0e-23 112.5 156 40.4
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 1.6e-22 111.3 164 40.2
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 3.5e-22 110.2 166 38.6
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.6e-22 109.8 135 43.0
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 6.0e-22 109.4 174 40.2
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 6.0e-22 109.4 174 40.2
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.0e-21 108.6 135 42.2
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.0e-21 108.6 175 38.9
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 3.9e-21 106.7 163 41.1
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 1.1e-20 105.1 166 41.0
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 2.5e-20 104.0 131 44.3
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 2.5e-20 104.0 179 37.4
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.6e-20 102.8 155 40.0
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 5.6e-20 102.8 144 43.1
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 4.7e-19 99.8 131 42.7
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 4.7e-19 99.8 153 39.2
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 8.1e-19 99.0 154 40.3
Thecc.05G326300 Theobroma cacao HOM05D011459 ORTHO05D013640 1.2e-17 95.1 162 35.8
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.0e-17 94.4 135 40.7
Sabra13G0004900 Salix brachista HOM05D011459 ORTHO05D013640 2.0e-17 94.4 160 39.4
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 2.6e-17 94.0 173 34.1
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.6e-17 94.0 173 34.1
QL07p004956 Quercus lobata HOM05D011459 ORTHO05D013640 2.6e-17 94.0 175 35.4
COL.COLO4_05518 Corchorus olitorius HOM05D011459 ORTHO05D013640 5.8e-17 92.8 161 36.0
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 9.8e-17 92.0 164 34.1
PGR031G3424 Punica granatum HOM05D011459 ORTHO05D013640 2.9e-16 90.5 118 41.5
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 6.4e-16 89.4 165 33.9
Thecc.05G326400 Theobroma cacao HOM05D011459 ORTHO05D013640 1.9e-15 87.8 160 35.6
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 3.2e-15 87.0 160 35.6
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.1e-15 86.7 117 38.5
QL07p004996 Quercus lobata HOM05D011459 ORTHO05D013640 9.2e-15 85.5 171 34.5
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 1.0e-13 82.0 165 35.2
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 1.7e-13 81.3 172 32.0
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 3.0e-13 80.5 141 33.3
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 6.6e-13 79.3 169 32.0
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.1e-12 78.6 165 29.7
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 1.5e-12 78.2 151 34.4
A06p06110 Brassica napus HOM05D009911 ORTHO05D009712 1.9e-12 77.8 176 31.8
C05p07380 Brassica napus HOM05D009911 ORTHO05D009712 1.9e-12 77.8 174 29.9
BraA06t23824Z Brassica rapa HOM05D009911 ORTHO05D009712 3.3e-12 77.0 173 31.8
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 9.5e-12 75.5 178 32.6
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 9.5e-12 75.5 94 45.7
Atru.chr2.222 Acer truncatum HOM05D011459 ORTHO05D013640 1.2e-11 75.1 171 31.0
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 2.1e-11 74.3 166 29.5
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.8e-11 73.9 94 45.7
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 2.8e-11 73.9 168 29.2
AT1G09370 Arabidopsis thaliana HOM05D009911 ORTHO05D009712 1.8e-10 71.2 161 28.6
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 2.3e-10 70.9 165 28.5
Carub.0001s0871 Capsella rubella HOM05D009911 ORTHO05D009712 3.1e-10 70.5 179 31.8
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 6.8e-10 69.3 172 27.9
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 8.9e-10 68.9 99 35.4
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 8.9e-10 68.9 164 27.4
BolC5t29496H Brassica oleracea HOM05D009911 ORTHO05D009712 2.0e-09 67.8 167 26.3
C05p07390 Brassica napus HOM05D009911 ORTHO05D009712 2.6e-09 67.4 167 26.3
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 3.4e-09 67.0 165 26.7
Thhalv10009653m.g Eutrema salsugineum HOM05D009911 ORTHO05D009712 4.4e-09 66.6 158 30.4
Sabra11G0112900 Salix brachista HOM05D000311 ORTHO05D000183 1.7e-08 64.7 58 53.4
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 2.9e-08 63.9 96 37.5
SalBow7G3223 Salvia bowleyana HOM05D009933 ORTHO05D012084 3.7e-08 63.5 151 29.1
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 4.9e-08 63.2 100 36.0
TAR362G0829 Trochodendron aralioides HOM05D011459 ORTHO05D013640 6.4e-08 62.8 115 34.8
SalBow7G3334 Salvia bowleyana HOM05D000059 ORTHO05D012084 8.4e-08 62.4 151 28.5
Potri.013G005750 Populus trichocarpa HOM05D011459 ORTHO05D013640 1.4e-07 61.6 78 44.9
SalBow7G2832 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.9e-07 61.2 151 28.5
Oeu060879.1 Olea europaea HOM05D009933 ORTHO05D012084 1.2e-06 58.5 162 25.9
A06p06120 Brassica napus HOM05D009911 ORTHO05D009712 3.5e-06 57.0 168 25.6
BraA06t23825Z Brassica rapa HOM05D009911 ORTHO05D009712 3.5e-06 57.0 168 25.6
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 3.5e-06 57.0 115 32.2


User provided reference genes

Program Settings