Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 6.9e-46 186.8 86 100.0
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.4e-35 152.5 86 82.6
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 3.1e-30 134.8 84 78.6
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 1.6e-29 132.5 84 77.4
Sed0010612 Sechium edule HOM05D008018 ORTHO05D001531 3.2e-19 98.2 77 62.3
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 4.1e-14 81.3 75 61.3
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 6.6e-12 73.9 68 58.8
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.5e-11 72.8 73 54.8
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.9e-11 72.4 73 54.8
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.5e-11 72.0 79 54.4
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.5e-11 72.0 79 54.4
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 4.2e-11 71.2 85 50.6
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.5e-11 70.9 83 48.2
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 7.2e-11 70.5 74 54.1
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 7.2e-11 70.5 74 54.1
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 1.2e-10 69.7 60 58.3
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-10 69.3 71 53.5
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-10 69.3 71 53.5
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-10 69.3 71 53.5
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.8e-10 68.6 83 47.0
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 3.6e-10 68.2 60 60.0
Sed0013340 Sechium edule HOM05D002165 ORTHO05D001531 3.6e-10 68.2 49 65.3
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.7e-10 67.8 74 52.7
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.7e-10 67.8 75 50.7
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.7e-10 67.8 75 50.7
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 6.1e-10 67.4 76 48.7
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 6.1e-10 67.4 75 50.7
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 1.8e-09 65.9 56 60.7
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 4.0e-09 64.7 69 52.2
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 4.0e-09 64.7 75 49.3
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.0e-09 64.7 75 49.3
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 5.2e-09 64.3 70 52.9
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 6.8e-09 63.9 76 47.4
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 8.9e-09 63.5 70 51.4
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.2e-08 63.2 83 43.4
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.2e-08 63.2 66 51.5
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.5e-08 62.8 68 52.9
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 1.5e-08 62.8 68 52.9
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-08 62.8 68 52.9
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-08 62.8 68 52.9
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.5e-08 62.8 68 52.9
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 1.5e-08 62.8 68 52.9
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.5e-08 62.8 76 50.0
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 2.0e-08 62.4 45 68.9
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 2.6e-08 62.0 69 53.6
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 2.6e-08 62.0 65 53.8
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.4e-08 61.6 83 45.8
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 4.4e-08 61.2 70 50.0
CsaV3_6G002620 Cucumis sativus L. HOM05D002165 ORTHO05D001531 4.4e-08 61.2 36 72.2
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 4.4e-08 61.2 81 45.7
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 4.4e-08 61.2 56 51.8
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 5.7e-08 60.8 73 52.1
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 5.7e-08 60.8 73 52.1
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 5.7e-08 60.8 73 52.1
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 5.7e-08 60.8 73 52.1
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 5.7e-08 60.8 73 52.1
CsaV3_6G002650 Cucumis sativus L. HOM05D002165 ORTHO05D001531 5.7e-08 60.8 36 69.4
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 7.5e-08 60.5 76 52.6
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 7.5e-08 60.5 67 52.2
ClCG08G002280 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.8e-08 60.1 36 72.2
ClCG08G002300 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.8e-08 60.1 36 72.2
ClCG08G002330 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.8e-08 60.1 36 72.2
ClCG08G002340 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.8e-08 60.1 36 72.2
ClCG08G002370 Citrullus lanatus HOM05D002165 ORTHO05D001531 9.8e-08 60.1 36 72.2
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 9.8e-08 60.1 31 80.6
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 9.8e-08 60.1 86 45.3
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 1.3e-07 59.7 57 54.4
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.7e-07 59.3 71 49.3
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 1.7e-07 59.3 68 52.9
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.7e-07 59.3 73 45.2
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-07 58.9 69 53.6
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 2.2e-07 58.9 69 53.6
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 2.2e-07 58.9 69 53.6
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 2.2e-07 58.9 69 55.1
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 2.8e-07 58.5 68 52.9
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.9e-07 57.8 69 46.4
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 4.9e-07 57.8 71 49.3
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.9e-07 57.8 76 47.4
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 6.3e-07 57.4 69 52.2
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 6.3e-07 57.4 71 49.3
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 6.3e-07 57.4 68 51.5
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 6.3e-07 57.4 69 52.2
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 6.3e-07 57.4 69 52.2
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 6.3e-07 57.4 65 49.2
Prupe.4G278700 Prunus persica HOM05D002165 ORTHO05D001531 6.3e-07 57.4 80 43.8
Sed0012842 Sechium edule HOM05D002165 ORTHO05D001531 6.3e-07 57.4 40 65.0
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 8.3e-07 57.0 69 52.2
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 8.3e-07 57.0 67 50.7
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 8.3e-07 57.0 67 50.7
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 8.3e-07 57.0 67 50.7
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 8.3e-07 57.0 67 50.7
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 8.3e-07 57.0 67 50.7
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 8.3e-07 57.0 69 52.2
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 8.3e-07 57.0 74 44.6
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 8.3e-07 57.0 72 47.2
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 8.3e-07 57.0 55 50.9
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 8.3e-07 57.0 55 50.9
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 49.3
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 52.2
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 1.1e-06 56.6 71 47.9
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 1.1e-06 56.6 64 50.0
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.1e-06 56.6 66 47.0
Nn3g21955 Nelumbo nucifera HOM05D002165 ORTHO05D001531 1.4e-06 56.2 73 50.7
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.4e-06 56.2 60 53.3
TPR.G18867 Trifolium pratense HOM05D008018 ORTHO05D001531 1.4e-06 56.2 74 45.9
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.4e-06 56.2 77 42.9
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 1.8e-06 55.8 76 44.7
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 1.8e-06 55.8 61 45.9
ECA240G0021 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.8e-06 55.8 72 47.2
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.8e-06 55.8 77 39.0
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 2.4e-06 55.5 59 54.2
Lsat_1_v5_gn_9_85080 Lactuca sativa HOM05D002165 ORTHO05D001531 2.4e-06 55.5 74 47.3
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 2.4e-06 55.5 75 41.3
Phvul.007G205300 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 2.4e-06 55.5 72 43.1
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-06 55.1 67 49.3
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-06 55.1 67 49.3
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 3.1e-06 55.1 73 45.2
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.1e-06 55.1 77 37.7
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 3.1e-06 55.1 77 37.7
Lj1g0006603 Lotus japonicus HOM05D008018 ORTHO05D001531 3.1e-06 55.1 78 38.5
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 4.1e-06 54.7 72 43.1
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 4.1e-06 54.7 72 43.1
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 4.1e-06 54.7 77 42.9
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 5.4e-06 54.3 75 42.7
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 5.4e-06 54.3 59 54.2
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 5.4e-06 54.3 59 54.2
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 5.4e-06 54.3 59 54.2
CiPaw.01G127300 Carya illinoinensis HOM05D002165 ORTHO05D001531 5.4e-06 54.3 69 50.7
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.4e-06 54.3 67 47.8
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 7.0e-06 53.9 59 54.2
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 7.0e-06 53.9 59 54.2
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 7.0e-06 53.9 77 42.9
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 7.0e-06 53.9 44 56.8
Glyma.03G228000 Glycine max HOM05D008018 ORTHO05D001531 7.0e-06 53.9 81 40.7
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 7.0e-06 53.9 58 55.2
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 7.0e-06 53.9 70 44.3
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 7.0e-06 53.9 60 48.3
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.2e-06 53.5 67 47.8
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.2e-06 53.5 67 47.8
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.2e-06 53.5 59 52.5


User provided reference genes

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