Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 4.1e-142 508.1 259 100.0
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 5.0e-116 421.4 277 79.8
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 8.1e-98 360.9 216 84.3
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 3.9e-76 288.9 220 72.7
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 9.1e-49 198.0 261 46.7
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 3.0e-44 183.0 262 45.0
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 8.8e-44 181.4 265 44.9
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 8.8e-44 181.4 265 44.5
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 2.6e-43 179.9 265 43.8
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.3e-42 177.6 263 44.1
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 1.0e-39 167.9 266 42.9
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 2.9e-39 166.4 237 44.3
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 2.9e-39 166.4 239 43.1
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.1e-38 164.5 260 43.1
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 1.9e-38 163.7 238 47.5
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.4e-36 157.5 272 41.2
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 1.8e-36 157.1 258 39.1
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 1.1e-35 154.5 266 41.0
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.8e-34 149.8 263 40.7
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.1e-33 147.9 259 37.8
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.8e-33 147.1 263 40.3
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 4.1e-33 146.0 262 38.9
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 3.5e-32 142.9 264 39.8
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 5.9e-32 142.1 256 38.3
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 1.0e-31 141.4 265 39.2
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.3e-31 141.0 264 39.4
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 1.1e-30 137.9 263 39.5
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 3.2e-30 136.3 260 39.2
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 2.7e-29 133.3 261 38.3
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 3.6e-29 132.9 259 38.6
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 4.7e-29 132.5 236 40.7
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 6.1e-29 132.1 263 36.1
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 8.0e-29 131.7 272 36.8
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 8.0e-29 131.7 318 32.7
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 1.4e-28 131.0 263 36.1
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 1.4e-28 131.0 261 39.1
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 1.8e-28 130.6 267 37.1
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.3e-28 130.2 298 33.2
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 2.3e-28 130.2 304 33.2
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 5.2e-28 129.0 300 32.3
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 5.2e-28 129.0 269 34.6
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 8.8e-28 128.3 266 36.5
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 2.0e-27 127.1 261 37.9
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 3.4e-27 126.3 303 32.3
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 9.7e-27 124.8 260 36.9
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 9.7e-27 124.8 260 37.3
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 9.7e-27 124.8 253 37.5
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.3e-26 124.4 304 32.6
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 1.7e-26 124.0 289 34.6
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.7e-26 124.0 263 36.1
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.7e-26 124.0 263 36.1
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 3.7e-26 122.9 285 37.9
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 1.8e-25 120.6 286 34.3
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 2.4e-25 120.2 306 34.3
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 5.3e-25 119.0 265 40.0
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 5.3e-25 119.0 261 35.6
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 9.1e-25 118.2 278 35.6
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.2e-24 117.9 297 34.0
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 1.6e-24 117.5 252 35.3
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 1.6e-24 117.5 268 36.6
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 2.0e-24 117.1 275 37.1
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.5e-24 116.3 263 35.4
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.0e-23 114.8 269 36.1
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 1.0e-23 114.8 245 36.7
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.3e-23 114.4 266 34.2
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.7e-23 114.0 308 31.2
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 2.2e-23 113.6 262 34.7
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.2e-23 113.6 296 31.4
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 2.2e-23 113.6 328 30.5
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 3.8e-23 112.8 279 31.9
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 3.8e-23 112.8 262 35.1
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 5.0e-23 112.5 294 31.0
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 5.0e-23 112.5 304 32.6
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 6.5e-23 112.1 267 31.8
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 6.5e-23 112.1 262 34.7
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 1.1e-22 111.3 294 33.3
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 1.9e-22 110.5 262 34.7
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 2.5e-22 110.2 243 36.6
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 7.2e-22 108.6 262 34.7
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 9.4e-22 108.2 316 30.7
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 2.1e-21 107.1 267 33.0
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 3.6e-21 106.3 297 33.3
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 3.6e-21 106.3 261 34.1
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 4.7e-21 105.9 302 30.1
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 8.0e-21 105.1 263 34.2
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 8.0e-21 105.1 266 35.0
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 1.4e-20 104.4 266 33.1
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.8e-20 104.0 307 30.6
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 3.0e-20 103.2 265 34.0
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 3.0e-20 103.2 266 35.7
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 5.2e-20 102.4 241 34.9
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 5.2e-20 102.4 308 30.8
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 1.5e-19 100.9 212 35.8
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.5e-19 100.9 306 30.4
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.5e-19 100.9 260 30.8
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 2.0e-19 100.5 256 33.6
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 4.4e-19 99.4 279 33.0
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 5.7e-19 99.0 264 34.1
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 1.7e-18 97.4 268 32.1
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.2e-18 97.1 244 36.9
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 2.8e-18 96.7 242 35.1
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 6.3e-18 95.5 260 31.9
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 6.3e-18 95.5 299 32.4
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 8.3e-18 95.1 244 34.4
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 3.1e-17 93.2 314 28.3
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 5.4e-17 92.4 242 33.9
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 5.4e-17 92.4 247 34.0
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 5.4e-17 92.4 222 34.2
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 9.1e-17 91.7 203 34.0
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 1.2e-16 91.3 242 33.5
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 1.6e-16 90.9 246 31.7
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 2.0e-16 90.5 246 31.7
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 2.7e-16 90.1 223 36.3
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 4.5e-16 89.4 246 34.6
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 4.5e-16 89.4 280 31.8
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 5.9e-16 89.0 246 33.3
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 7.7e-16 88.6 128 43.8
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 1.0e-15 88.2 248 32.3
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 1.0e-15 88.2 240 32.9
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 1.7e-15 87.4 269 30.5
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 1.7e-15 87.4 151 40.4
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 1.7e-15 87.4 307 29.3
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 2.9e-15 86.7 238 31.9
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 2.9e-15 86.7 238 31.9
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.9e-15 86.7 106 50.9
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.9e-15 86.7 106 50.9
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 5.0e-15 85.9 241 31.5
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 5.0e-15 85.9 241 31.5
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 5.0e-15 85.9 241 31.5
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 6.6e-15 85.5 269 30.9
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 6.6e-15 85.5 245 31.0
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 8.6e-15 85.1 248 31.9
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 8.6e-15 85.1 292 29.1
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 2.5e-14 83.6 209 34.0
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 3.3e-14 83.2 124 41.1
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.2e-14 82.8 362 27.1
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.2e-14 82.8 362 27.1
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 5.5e-14 82.4 248 30.6
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 5.5e-14 82.4 303 25.7
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 5.5e-14 82.4 153 35.3
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 7.2e-14 82.0 226 34.1
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 9.5e-14 81.6 267 30.3
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 9.5e-14 81.6 240 32.1
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 6.1e-13 79.0 233 34.3
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 8.0e-13 78.6 235 33.2
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 8.0e-13 78.6 236 34.3
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 1.4e-12 77.8 229 34.1
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.4e-12 77.8 226 32.7
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 1.4e-12 77.8 235 33.2
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 2.3e-12 77.0 232 32.8
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 3.0e-12 76.6 252 31.0
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 3.0e-12 76.6 119 41.2
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 5.2e-12 75.9 232 31.9
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 1.2e-11 74.7 232 31.9
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 2.0e-11 73.9 238 31.5
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 2.0e-11 73.9 238 31.5
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 2.0e-11 73.9 253 29.6
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 2.0e-11 73.9 248 29.0
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 4.4e-11 72.8 238 31.5
ECA240G4545 Erigeron canadensis HOM05D003759 ORTHO05D004149 5.7e-11 72.4 243 30.9
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 1.3e-10 71.2 243 31.3
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 1.3e-10 71.2 243 31.3
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 4.9e-10 69.3 235 29.4
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 6.3e-10 68.9 84 45.2
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 6.3e-10 68.9 248 28.6
HanXRQChr16g0511321 Helianthus annuus HOM05D003759 ORTHO05D004149 8.3e-10 68.6 121 43.0
Dinv41365 Davidia involucrata HOM05D003759 ORTHO05D004149 1.8e-09 67.4 72 59.7
Aa31LG2G19870 Aethionema arabicum HOM05D003759 ORTHO05D004149 2.4e-09 67.0 239 28.5
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 5.4e-09 65.9 236 29.2
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 9.2e-09 65.1 218 30.7
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 9.2e-09 65.1 238 28.2
BcaB01g04466 Brassica carinata HOM05D003759 ORTHO05D004149 2.0e-08 63.9 237 31.2
Nn8g39944 Nelumbo nucifera HOM05D003759 ORTHO05D004149 2.0e-08 63.9 73 50.7
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 3.5e-08 63.2 78 44.9
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 7.8e-08 62.0 60 58.3
SEGI_22308 Sequoiadendron giganteum HOM05D024907 ORTHO05D030594 2.3e-07 60.5 245 28.6
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 3.9e-07 59.7 149 34.2
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 5.0e-07 59.3 119 40.3
EL10Ac2g02493 Beta vulgaris HOM05D008192 ORTHO05D010301 4.3e-06 56.2 237 27.8
HanXRQChr09g0244571 Helianthus annuus HOM05D003759 ORTHO05D004149 4.3e-06 56.2 193 33.2
SEGI_09341 Sequoiadendron giganteum HOM05D024907 ORTHO05D030594 4.3e-06 56.2 83 42.2
CDE02G3703 Ceratophyllum demersum HOM05D003759 ORTHO05D004149 5.6e-06 55.8 138 35.5


User provided reference genes

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