Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 1.3e-51 206.1 104 100.0
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 1.8e-48 195.7 104 94.2
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 2.9e-46 188.3 104 90.4
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 2.7e-44 181.8 104 87.5
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 3.9e-43 177.9 95 94.7
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 3.9e-43 177.9 104 83.7
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.5e-42 176.0 104 81.7
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 1.5e-42 176.0 104 81.7
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 2.5e-42 175.3 102 85.3
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.3e-41 172.9 104 81.7
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 2.1e-41 172.2 104 79.8
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 2.8e-41 171.8 104 80.8
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 3.6e-41 171.4 104 80.8
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 3.6e-41 171.4 102 82.4
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 1.1e-40 169.9 102 80.4
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 1.8e-40 169.1 104 79.8
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 3.1e-40 168.3 104 76.0
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 4.0e-40 167.9 104 79.8
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 6.9e-40 167.2 102 79.4
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 9.0e-40 166.8 104 76.9
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 1.2e-39 166.4 105 77.1
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 1.5e-39 166.0 104 77.9
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 1.5e-39 166.0 104 77.9
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 4.5e-39 164.5 104 76.0
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.6e-39 163.7 104 80.8
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 1.7e-38 162.5 105 79.0
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 2.2e-38 162.2 104 78.8
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 2.2e-38 162.2 103 75.7
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 2.9e-38 161.8 105 77.1
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 6.4e-38 160.6 99 77.8
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 8.4e-38 160.2 104 75.0
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 1.1e-37 159.8 103 76.7
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 1.4e-37 159.5 105 75.2
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 1.9e-37 159.1 105 77.1
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.9e-37 159.1 104 76.0
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 2.4e-37 158.7 104 74.0
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 3.2e-37 158.3 105 75.2
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 5.4e-37 157.5 104 75.0
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 5.4e-37 157.5 104 75.0
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 7.1e-37 157.1 103 77.7
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.2e-36 156.4 104 74.0
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 1.6e-36 156.0 104 72.1
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 1.6e-36 156.0 105 74.3
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 1.6e-36 156.0 104 74.0
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 2.7e-36 155.2 102 74.5
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 2.7e-36 155.2 103 74.8
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 2.7e-36 155.2 104 73.1
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 3.5e-36 154.8 104 72.1
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.0e-35 153.3 100 75.0
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 1.8e-35 152.5 104 72.1
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 2.3e-35 152.1 103 73.8
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.9e-34 149.1 95 77.9
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 1.9e-34 149.1 97 76.3
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 2.5e-34 148.7 102 70.6
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 7.4e-34 147.1 95 78.9
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 9.6e-34 146.7 99 73.7
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 1.6e-33 146.0 102 72.5
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 2.8e-33 145.2 101 72.3
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.8e-33 145.2 104 66.3
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 2.8e-33 145.2 92 77.2
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 4.8e-33 144.4 103 70.9
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 4.8e-33 144.4 99 70.7
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 6.2e-33 144.1 104 66.3
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 9.0e-32 140.2 99 69.7
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 1.5e-31 139.4 92 73.9
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 2.0e-31 139.0 92 72.8
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 4.5e-31 137.9 92 72.8
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 4.5e-31 137.9 89 74.2
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 5.8e-31 137.5 92 73.9
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 7.6e-31 137.1 90 74.4
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 1.3e-30 136.3 92 72.8
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 1.3e-30 136.3 104 65.4
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 2.2e-30 135.6 92 71.7
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 2.9e-30 135.2 90 74.4
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 2.9e-30 135.2 103 68.9
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 6.5e-30 134.0 91 71.4
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 8.4e-30 133.7 103 68.0
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 1.1e-29 133.3 94 73.4
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 1.4e-29 132.9 90 72.2
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 3.2e-29 131.7 92 69.6
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 3.2e-29 131.7 92 69.6
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 4.2e-29 131.3 90 71.1
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 4.2e-29 131.3 90 71.1
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 9.3e-29 130.2 100 64.0
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 9.3e-29 130.2 102 65.7
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 1.2e-28 129.8 92 69.6
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 4.6e-28 127.9 89 70.8
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 6.0e-28 127.5 105 61.9
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 1.3e-27 126.3 93 66.7
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 6.7e-27 124.0 76 78.9
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 8.7e-27 123.6 76 81.6
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 9.6e-26 120.2 76 80.3
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 8.2e-25 117.1 76 75.0
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 1.8e-24 115.9 76 75.0
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 3.1e-24 115.2 90 66.7
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 1.5e-23 112.8 80 72.5
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 3.4e-23 111.7 75 72.0
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 4.5e-23 111.3 99 56.6
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 1.0e-22 110.2 79 69.6
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 8.4e-22 107.1 75 72.0
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 2.5e-21 105.5 64 79.7
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 2.5e-21 105.5 100 58.0
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 3.2e-21 105.1 74 70.3
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 4.2e-21 104.8 74 70.3
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 9.3e-21 103.6 78 67.9
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.6e-20 102.8 102 55.9
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 2.3e-19 99.0 64 79.7
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 5.1e-19 97.8 73 65.8
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 2.2e-17 92.4 96 51.0
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 5.9e-15 84.3 78 52.6
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 1.0e-14 83.6 86 50.0
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 3.8e-14 81.6 98 50.0
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 8.5e-14 80.5 75 56.0
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 1.4e-13 79.7 52 73.1
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 1.4e-13 79.7 62 69.4
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 3.9e-11 71.6 86 47.7
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 2.5e-10 68.9 87 44.8
C08p16940 Brassica napus HOM05D006914 ORTHO05D008583 3.4e-07 58.5 37 70.3


User provided reference genes

Program Settings