Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 2.7e-216 755.0 369 100.0
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 4.0e-191 671.4 367 89.1
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 1.2e-190 669.8 369 88.3
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 4.1e-180 634.8 371 84.1
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.3e-136 490.3 373 65.4
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 3.7e-136 488.8 367 65.9
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 1.8e-135 486.5 374 62.6
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 1.8e-135 486.5 374 62.6
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 8.4e-133 477.6 372 64.0
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 2.7e-131 472.6 367 65.1
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 1.0e-130 470.7 374 64.2
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 4.3e-129 465.3 368 64.9
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 5.7e-129 464.9 366 63.7
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 7.4e-129 464.5 375 63.5
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 3.7e-128 462.2 368 64.4
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 8.2e-128 461.1 368 64.4
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-127 460.7 372 60.8
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.1e-127 458.8 372 61.0
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 4.1e-127 458.8 375 62.1
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 6.9e-127 458.0 360 63.9
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 9.0e-127 457.6 367 62.7
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.6e-126 456.1 368 64.1
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 1.0e-125 454.1 363 63.6
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.9e-125 452.6 374 60.4
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 2.9e-125 452.6 364 61.0
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 1.1e-124 450.7 375 61.3
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 2.7e-123 446.0 365 61.9
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 1.8e-122 443.4 364 61.8
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 2.3e-122 443.0 373 60.9
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 2.3e-122 443.0 370 61.1
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 2.0e-121 439.9 375 61.3
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 4.3e-121 438.7 362 59.9
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.7e-120 436.8 364 61.3
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 6.3e-120 434.9 378 58.2
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 1.8e-119 433.3 365 61.4
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.9e-119 431.4 360 59.7
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 4.5e-118 428.7 378 56.9
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 4.2e-116 422.2 363 56.7
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 1.2e-115 420.6 366 57.4
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 6.1e-115 418.3 372 55.9
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 6.1e-115 418.3 366 56.8
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.4e-114 417.2 378 56.6
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 3.3e-113 412.5 378 56.1
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 3.3e-113 412.5 378 56.1
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 3.3e-113 412.5 384 54.9
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 3.3e-113 412.5 384 54.9
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.7e-113 411.0 368 56.8
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 8.2e-112 407.9 380 53.9
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 4.1e-111 405.6 357 58.0
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 7.0e-111 404.8 381 55.4
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 5.9e-110 401.7 381 55.1
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 8.5e-109 397.9 374 57.2
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 1.1e-108 397.5 372 54.8
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.9e-108 396.7 372 54.3
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 5.5e-108 395.2 373 55.0
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 2.7e-107 392.9 363 56.7
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.6e-107 392.5 372 54.3
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 8.0e-107 391.3 359 56.0
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.4e-106 390.6 377 54.9
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 1.8e-106 390.2 383 53.0
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 5.2e-106 388.7 380 55.0
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 1.5e-105 387.1 386 54.4
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 2.0e-105 386.7 385 54.8
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 5.7e-105 385.2 377 55.2
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 2.8e-104 382.9 374 52.7
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.1e-103 380.9 381 55.6
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 1.8e-103 380.2 362 54.1
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 2.4e-103 379.8 388 53.1
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 5.3e-103 378.6 381 55.4
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 9.1e-103 377.9 345 56.2
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 1.6e-102 377.1 370 55.9
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 2.0e-102 376.7 381 54.9
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 5.9e-102 375.2 381 54.9
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 7.7e-102 374.8 370 55.4
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.3e-101 374.0 366 55.5
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 5.0e-101 372.1 376 51.3
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 8.5e-101 371.3 388 52.3
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 3.2e-100 369.4 382 51.8
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 5.5e-100 368.6 371 50.1
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 5.5e-100 368.6 379 53.8
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 2.1e-99 366.7 355 54.6
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 2.3e-98 363.2 376 56.1
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 6.8e-98 361.7 395 48.9
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.2e-97 360.9 372 52.7
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 3.4e-97 359.4 367 51.5
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 2.2e-96 356.7 389 50.6
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 2.8e-96 356.3 366 50.8
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 6.5e-93 345.1 351 55.0
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 1.9e-92 343.6 351 54.7
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.9e-92 343.6 351 54.7
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 4.2e-92 342.4 379 50.4
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.2e-91 340.9 368 53.8
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 1.6e-91 340.5 350 54.6
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 1.9e-84 317.0 233 65.7
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 2.0e-81 307.0 230 65.7
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 4.1e-79 299.3 266 57.5
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 5.0e-77 292.4 251 59.4
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 9.2e-71 271.6 368 44.3
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 1.7e-69 267.3 371 41.8
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 2.3e-69 266.9 366 42.9
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.2e-65 254.6 204 61.8
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 2.0e-65 253.8 299 49.2
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 2.6e-65 253.4 215 57.7
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.4e-65 253.1 211 59.2
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.8e-65 252.3 211 59.7
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.9e-64 249.2 211 58.8
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 4.3e-60 236.1 327 42.8
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 8.3e-56 221.9 182 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 3.2e-55 219.9 390 35.1
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 1.6e-51 207.6 213 50.7
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 1.3e-43 181.4 161 57.8
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.9e-40 170.2 210 44.8
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 1.4e-39 167.9 256 42.2
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.2e-38 164.9 121 62.0
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.0e-37 161.8 398 30.2
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 2.0e-33 147.5 155 48.4
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 1.9e-31 141.0 184 41.8
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.0e-21 107.1 64 71.9
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.2e-19 99.4 64 65.6
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.0e-16 89.7 64 64.1
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 1.8e-10 71.2 140 35.7
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 6.9e-10 69.3 51 58.8
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 1.7e-08 64.7 52 55.8
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 1.7e-08 64.7 52 55.8
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 1.7e-08 64.7 52 55.8
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 2.9e-08 63.9 54 53.7
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 5.0e-08 63.2 48 54.2
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 2.1e-06 57.8 55 47.3


User provided reference genes

Program Settings