Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.9e-113 412.5 207 100.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 6.1e-64 248.1 138 88.4
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.6e-62 242.7 138 87.0
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 8.0e-56 221.1 138 80.4
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 4.4e-54 215.3 138 77.5
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 4.1e-36 155.6 137 57.7
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.3e-34 149.8 137 56.9
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 6.6e-34 148.3 129 58.1
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.1e-33 147.5 130 58.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 2.5e-33 146.4 138 55.8
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 4.3e-33 145.6 136 56.6
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 4.7e-32 142.1 128 59.4
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 6.2e-32 141.7 130 60.0
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 8.0e-32 141.4 130 59.2
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 8.0e-32 141.4 132 56.8
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.1e-31 141.0 131 56.5
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 2.3e-31 139.8 128 58.6
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.3e-31 139.8 137 56.9
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.1e-31 139.4 112 58.9
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 4.0e-31 139.0 138 52.2
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 4.0e-31 139.0 133 55.6
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 8.9e-31 137.9 138 52.2
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.5e-30 137.1 128 57.0
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.0e-30 136.7 130 55.4
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.0e-30 136.7 126 59.5
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.0e-30 136.7 138 52.2
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.0e-30 136.7 138 52.2
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.6e-30 136.3 130 57.7
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.4e-30 136.0 131 55.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 4.4e-30 135.6 130 56.2
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 5.8e-30 135.2 132 55.3
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.8e-30 135.2 109 63.3
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 9.8e-30 134.4 130 54.6
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.2e-29 133.3 136 53.7
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.2e-29 133.3 137 53.3
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 2.9e-29 132.9 117 61.5
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.9e-29 132.9 127 57.5
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 2.9e-29 132.9 139 54.7
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 3.7e-29 132.5 130 55.4
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.1e-28 131.0 130 54.6
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.4e-28 130.6 108 60.2
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.4e-28 130.6 109 61.5
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.4e-28 130.6 130 53.8
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 3.2e-28 129.4 104 63.5
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 3.2e-28 129.4 133 49.6
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 4.1e-28 129.0 109 60.6
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.4e-28 128.6 130 53.8
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 7.0e-28 128.3 104 63.5
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 7.0e-28 128.3 112 59.8
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 9.2e-28 127.9 134 53.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.2e-27 127.5 107 60.7
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.6e-27 127.1 127 53.5
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 2.1e-27 126.7 108 63.0
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.1e-27 126.7 106 61.3
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 2.7e-27 126.3 127 51.2
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 3.5e-27 125.9 124 54.8
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 3.5e-27 125.9 130 52.3
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.5e-27 125.9 136 50.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.0e-26 124.4 130 49.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.3e-26 124.0 130 48.5
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.3e-26 124.0 107 58.9
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.7e-26 123.6 127 53.5
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 3.0e-26 122.9 106 63.2
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.0e-26 122.9 107 58.9
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 3.9e-26 122.5 132 54.5
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 5.1e-26 122.1 109 57.8
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 5.1e-26 122.1 130 52.3
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 6.6e-26 121.7 134 51.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 6.6e-26 121.7 106 59.4
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 8.6e-26 121.3 110 60.9
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 8.6e-26 121.3 126 52.4
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.1e-25 120.9 134 50.0
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.9e-25 120.2 132 51.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.5e-25 119.8 109 58.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 2.5e-25 119.8 107 58.9
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.5e-25 119.8 139 46.8
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 3.3e-25 119.4 132 50.0
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 4.3e-25 119.0 111 54.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.3e-25 119.0 108 57.4
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 7.3e-25 118.2 112 58.0
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 7.3e-25 118.2 112 58.0
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 7.3e-25 118.2 112 58.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-24 117.5 134 49.3
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.2e-24 117.5 108 58.3
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.6e-24 117.1 106 60.4
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.1e-24 116.7 106 56.6
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.8e-24 116.3 124 50.8
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.6e-24 115.9 134 48.5
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 3.6e-24 115.9 133 47.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.7e-24 115.5 135 48.1
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 4.7e-24 115.5 134 46.3
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 4.7e-24 115.5 109 51.4
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 6.2e-24 115.2 108 56.5
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.4e-23 114.0 103 55.3
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 3.1e-23 112.8 133 47.4
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.5e-22 110.5 133 45.9
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.0e-22 110.2 124 48.4
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.0e-22 110.2 130 50.8
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.6e-22 109.8 110 57.3
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.5e-22 108.2 138 46.4
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 9.9e-22 107.8 125 50.4
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 9.9e-22 107.8 125 50.4
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.7e-21 107.1 99 58.6
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.1e-20 104.4 94 58.5
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 7.1e-20 101.7 152 42.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.2e-19 100.9 87 57.5
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.6e-19 100.5 113 47.8
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.5e-19 99.4 88 56.8
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 3.5e-19 99.4 104 53.8
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.0e-18 97.8 141 43.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 3.0e-18 96.3 136 43.4
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 6.6e-18 95.1 104 51.0
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.3e-17 92.4 130 42.3
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.2e-16 90.9 60 83.3
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.2e-16 90.9 112 46.4
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 6.2e-16 88.6 86 54.7
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 1.8e-15 87.0 121 45.5
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 7.6e-14 81.6 73 57.5
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.9e-13 79.7 91 49.5
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 8.4e-13 78.2 69 55.1
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 7.1e-12 75.1 87 48.3
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.2e-11 74.3 124 37.1
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 7.8e-11 71.6 105 44.8
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 3.0e-10 69.7 115 40.0
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.1e-09 67.8 75 45.3
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.9e-09 67.0 72 48.6
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.5e-09 66.6 45 66.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-09 65.1 86 41.9
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-07 60.8 59 49.2
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 7.6e-06 55.1 61 52.5


User provided reference genes

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